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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2016, 2017 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2017 Dave Love <fx@gnu.org>
;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2019 Eric Bavier <bavier@member.fsf.org>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages benchmark)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix build-system gnu)
#:use-module (gnu packages compression)
#:use-module (gnu packages linux)
#:use-module (gnu packages maths)
#:use-module (gnu packages mpi)
#:use-module (gnu packages python)
gnu: Separate Python core packages from the rest. * gnu/packages/python.scm: Move hundreds of package definitions from here... * gnu/packages/python-xyz.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/ada.scm, gnu/packages/admin.scm, gnu/packages/android.scm, gnu/packages/audio.scm, gnu/packages/backup.scm, gnu/packages/benchmark.scm, gnu/packages/bioinformatics.scm, gnu/packages/bittorrent.scm, gnu/packages/calendar.scm, gnu/packages/check.scm, gnu/packages/chemistry.scm, gnu/packages/cluster.scm, gnu/packages/compression.scm, gnu/packages/connman.scm, gnu/packages/crypto.scm, gnu/packages/cups.scm, gnu/packages/databases.scm, gnu/packages/dav.scm, gnu/packages/direct-connect.scm, gnu/packages/disk.scm, gnu/packages/django.scm, gnu/packages/dlang.scm, gnu/packages/docker.scm, gnu/packages/ebook.scm, gnu/packages/elf.scm, gnu/packages/emacs.scm, gnu/packages/emulators.scm, gnu/packages/engineering.scm, gnu/packages/enlightenment.scm, gnu/packages/finance.scm, gnu/packages/fltk.scm, gnu/packages/fontutils.scm, gnu/packages/freedesktop.scm, gnu/packages/game-development.scm, gnu/packages/games.scm, gnu/packages/geo.scm, gnu/packages/gl.scm, gnu/packages/glib.scm, gnu/packages/gnome.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/graph.scm, gnu/packages/graphics.scm, gnu/packages/graphviz.scm, gnu/packages/gtk.scm, gnu/packages/ham-radio.scm, gnu/packages/image-processing.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/jrnl.scm, gnu/packages/julia.scm, gnu/packages/kde-frameworks.scm, gnu/packages/key-mon.scm, gnu/packages/libffi.scm, gnu/packages/libreoffice.scm, gnu/packages/libusb.scm, gnu/packages/lirc.scm, gnu/packages/logging.scm, gnu/packages/machine-learning.scm, gnu/packages/mail.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/medical.scm, gnu/packages/messaging.scm, gnu/packages/monitoring.scm, gnu/packages/mp3.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/nutrition.scm, gnu/packages/openldap.scm, gnu/packages/openstack.scm, gnu/packages/package-management.scm, gnu/packages/password-utils.scm, gnu/packages/patchutils.scm, gnu/packages/pdf.scm, gnu/packages/photo.scm, gnu/packages/polkit.scm, gnu/packages/protobuf.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/qt.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm, gnu/packages/search.scm, gnu/packages/selinux.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/simulation.scm, gnu/packages/ssh.scm, gnu/packages/statistics.scm, gnu/packages/storage.scm, gnu/packages/sync.scm, gnu/packages/terminals.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/tryton.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/virtualization.scm, gnu/packages/vpn.scm, gnu/packages/web-browsers.scm, gnu/packages/web.scm, gnu/packages/wicd.scm, gnu/packages/xdisorg.scm, gnu/packages/xorg.scm: Update module references.
2019-01-15 13:21:30 +00:00
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages storage)
#:use-module (ice-9 match))
(define-public fio
(package
(name "fio")
(version "3.14")
(source (origin
(method url-fetch)
(uri (string-append "http://brick.kernel.dk/snaps/"
"fio-" version ".tar.bz2"))
(sha256
(base32
"047y53nyhnmnxcrsfbsf0gcpxw7bli3n19ycscpxy9974j0fck0v"))))
(build-system gnu-build-system)
(arguments
'(#:test-target "test"
#:phases
(modify-phases %standard-phases
(add-after
'unpack 'patch-paths
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out"))
(gnuplot (string-append (assoc-ref inputs "gnuplot")
"/bin/gnuplot")))
(substitute* "tools/plot/fio2gnuplot"
(("/usr/share/fio") (string-append out "/share/fio"))
;; FIXME (upstream): The 'gnuplot' executable is used inline
;; in various os.system() calls mixed with *.gnuplot filenames.
(("; do gnuplot") (string-append "; do " gnuplot))
(("gnuplot mymath") (string-append gnuplot " mymath"))
(("gnuplot mygraph") (string-append gnuplot " mygraph")))
#t)))
(replace 'configure
(lambda* (#:key outputs #:allow-other-keys)
;; The configure script doesn't understand some of the
;; GNU options, so we can't use #:configure-flags.
(let ((out (assoc-ref outputs "out")))
(invoke "./configure"
(string-append "--prefix=" out))
#t)))
;; The main `fio` executable is fairly small and self contained.
;; Moving the auxiliary python and gnuplot scripts to a separate
;; output saves almost 400 MiB on the closure.
(add-after 'install 'move-outputs
(lambda* (#:key outputs #:allow-other-keys)
(let ((oldbin (string-append (assoc-ref outputs "out") "/bin"))
(newbin (string-append (assoc-ref outputs "utils") "/bin")))
(mkdir-p newbin)
(for-each (lambda (file)
(let ((src (string-append oldbin "/" file))
(dst (string-append newbin "/" file)))
(link src dst)
(delete-file src)))
'("fio2gnuplot" "fiologparser_hist.py"
"fiologparser.py"))
;; Make sure numpy et.al is found.
(wrap-program (string-append newbin "/fiologparser_hist.py")
`("PYTHONPATH" ":" prefix (,(getenv "PYTHONPATH"))))
#t))))))
(outputs '("out" "utils"))
(inputs
`(("ceph" ,ceph "lib")
("libaio" ,libaio)
("gnuplot" ,gnuplot)
("zlib" ,zlib)
("python-numpy" ,python2-numpy)
("python-pandas" ,python2-pandas)
("python" ,python-2)))
(home-page "https://github.com/axboe/fio")
(synopsis "Flexible I/O tester")
(description
"fio is a tool that will spawn a number of threads or processes doing a
particular type of I/O action as specified by the user. The typical use of fio
is to write a job file matching the I/O load one wants to simulate.")
;; The software is distributed under the GPL2, but a handful of components
;; are covered by other licenses.
(license (list license:gpl2 license:gpl2+ license:bsd-2
license:public-domain))))
;; Parameterized in anticipation of m(va)pich support
(define (imb mpi)
(package
(name (string-append "imb-" (package-name mpi)))
(version "2019.1")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/intel/mpi-benchmarks.git")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256 (base32 "18hfdyvl5i172gadiq9si1qxif5rvic0lifxpbrr7s59ylg8f9c4"))))
(build-system gnu-build-system)
(inputs
`(("mpi" ,mpi)))
(arguments
`(#:phases
(modify-phases %standard-phases
(delete 'configure)
(delete 'check)
(replace 'build
(lambda* (#:key inputs #:allow-other-keys)
(let ((mpi-home (assoc-ref inputs "mpi")))
;; Override default parallelism
(substitute* "Makefile"
(("make -j[[:digit:]]+")
(format #f "make -j~d" (parallel-job-count))))
(invoke "make" "SHELL=sh" "CC=mpicc" "CXX=mpic++"))))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin")))
(for-each
(lambda (file)
(install-file file bin))
'("IMB-IO" "IMB-EXT" "IMB-MPI1" "IMB-NBC" "IMB-RMA" "IMB-MT")))
#t)))))
(home-page "https://software.intel.com/en-us/articles/intel-mpi-benchmarks")
(synopsis "Intel MPI Benchmarks")
(description
"This package provides benchmarks for implementations of the @dfn{Message
Passing Interface} (MPI). It contains MPI performance measurements for
point-to-point and global communication, and file, operations for a range of
message sizes. The generated benchmark data fully characterize:
@itemize
@item
Performance of a cluster system, including node performance, network latency,
and throughput;
@item
Efficiency of the MPI implementation.
@end itemize")
(license license:cpl1.0)))
(define-public imb-openmpi (imb openmpi))
(define-public multitime
(package
(name "multitime")
(version "1.4")
(source (origin
(method url-fetch)
(uri (string-append "https://tratt.net/laurie/src/"
"multitime/releases/"
"multitime-" version ".tar.gz"))
(sha256
(base32
"0iyfsdrbyqa7a4ifrh19l9a48hgv7ld6m0d8yf9bkl12q0qw91fx"))))
(build-system gnu-build-system)
(arguments '(#:tests? #f)) ; there are no tests
(home-page "https://tratt.net/laurie/src/multitime/")
(synopsis "Time command execution over multiple executions")
(description
"The @code{time} utility is a simple and often effective way of measuring
how long a command takes to run (wall time). Unfortunately, running a command
once can give misleading timings. @code{multitime} is, in essence, a simple
extension to @code{time} which runs a command multiple times and prints the
timing means, standard deviations, mins, medians, and maxes having done so.
This can give a much better understanding of the command's performance.")
(license license:expat)))