2021-04-23 14:32:00 +00:00
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;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2021 Ricardo Wurmus <rekado@elephly.net>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages irods)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (guix packages)
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#:use-module (guix download)
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2021-04-23 14:32:01 +00:00
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#:use-module (guix git-download)
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2021-04-23 14:32:00 +00:00
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#:use-module (guix build-system cmake)
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#:use-module (guix utils)
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#:use-module (gnu packages)
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#:use-module (gnu packages backup)
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2021-04-23 14:32:01 +00:00
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#:use-module (gnu packages base)
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2021-04-23 14:32:00 +00:00
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#:use-module (gnu packages boost)
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#:use-module (gnu packages check)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages cpp)
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#:use-module (gnu packages databases)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages kerberos)
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#:use-module (gnu packages linux)
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#:use-module (gnu packages llvm)
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#:use-module (gnu packages logging)
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2021-04-23 14:32:01 +00:00
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#:use-module (gnu packages man)
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2021-04-23 14:32:00 +00:00
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#:use-module (gnu packages networking)
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#:use-module (gnu packages pretty-print)
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#:use-module (gnu packages python)
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#:use-module (gnu packages serialization)
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#:use-module (gnu packages tls)
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#:use-module (srfi srfi-1))
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(define-public irods
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(package
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(name "irods")
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(version "4.2.8")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://github.com/irods/irods/releases/download/"
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version "/irods-" version ".tar.gz"))
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(sha256
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(base32
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"0ny54c3r0j692rvbr4iibg7xgd2i7g9x8yyrw04j889bywix14rc"))))
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(build-system cmake-build-system)
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(arguments
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`(#:configure-flags
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(list
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"-DCMAKE_BUILD_TYPE=Release"
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(string-append "-DCMAKE_MODULE_LINKER_FLAGS=-Wl,-rpath="
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(assoc-ref %outputs "out") "/lib")
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(string-append "-DCMAKE_SHARED_LINKER_FLAGS=-Wl,-rpath="
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(assoc-ref %outputs "out") "/lib")
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(string-append "-DCMAKE_EXE_LINKER_FLAGS=-Wl,-rpath="
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(assoc-ref %outputs "out") "/lib")
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;; Configuration aborts if no generator format is set
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"-DCPACK_GENERATOR=TGZ"
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;; Configuration attempts to guess the distribution with Python.
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"-DIRODS_LINUX_DISTRIBUTION_NAME=guix"
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"-DIRODS_LINUX_DISTRIBUTION_VERSION_MAJOR=1"
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(string-append "-DIRODS_EXTERNALS_FULLPATH_CLANG="
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(assoc-ref %build-inputs "clang"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_CLANG_RUNTIME="
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(assoc-ref %build-inputs "clang-runtime"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_CPPZMQ="
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(assoc-ref %build-inputs "cppzmq"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_ARCHIVE="
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(assoc-ref %build-inputs "libarchive"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_AVRO="
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(assoc-ref %build-inputs "avro-cpp"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_BOOST="
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(assoc-ref %build-inputs "boost"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_ZMQ="
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(assoc-ref %build-inputs "zeromq"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_JSON="
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(assoc-ref %build-inputs "json"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_CATCH2="
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(assoc-ref %build-inputs "catch2"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_NANODBC="
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(assoc-ref %build-inputs "nanodbc"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_FMT="
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(assoc-ref %build-inputs "fmt")))
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#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'unset-Werror
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(lambda _
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;; -Werror kills the build due to a comparison REQUIRE(errs.size() == err->len);
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;; in unit_tests/src/test_irods_lifetime_manager.cpp
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(substitute* "CMakeLists.txt"
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(("-Werror") ""))))
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(add-after 'unpack 'remove-FHS-and-prefix-assumptions
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(lambda* (#:key inputs #:allow-other-keys)
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(substitute* '("CMakeLists.txt"
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"cmake/server.cmake"
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"cmake/development_library.cmake"
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"cmake/runtime_library.cmake")
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(("usr/") ""))
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(substitute* "lib/core/src/irods_default_paths.cpp"
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(("path.append\\(\"usr\"\\)") "path")
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(("path.remove_filename\\(\\).remove_filename\\(\\).remove_filename\\(\\)")
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"path.remove_filename().remove_filename()"))
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(substitute* "scripts/irods/paths.py"
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(("'usr', 'lib', 'irods'") "'lib', 'irods'"))
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(substitute* "scripts/irods/pypyodbc.py"
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(("\"/usr/lib/libodbc.so\"")
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(string-append (assoc-ref inputs "unixodbc") "/lib/libodbc.so")))))
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(add-after 'set-paths 'adjust-CPLUS_INCLUDE_PATH
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(lambda* (#:key inputs #:allow-other-keys)
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(let ((gcc (assoc-ref inputs "gcc")))
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(setenv "CPLUS_INCLUDE_PATH"
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(string-join
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(cons* (string-append (assoc-ref inputs "libcxx+libcxxabi")
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"/include/c++/v1")
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(string-append (assoc-ref inputs "catch2")
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"/include/catch2")
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(string-append (assoc-ref inputs "json")
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"/include/nlohmann")
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;; Hide GCC's C++ headers so that they do not interfere with
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;; the Clang headers.
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(delete (string-append gcc "/include/c++")
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(string-split (getenv "CPLUS_INCLUDE_PATH")
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#\:)))
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":"))
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(format #true
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"environment variable `CPLUS_INCLUDE_PATH' changed to ~a~%"
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(getenv "CPLUS_INCLUDE_PATH"))))))))
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(inputs
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`(("avro-cpp" ,avro-cpp-1.9-for-irods)
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("boost" ,boost-for-irods)
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("cppzmq" ,cppzmq)
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("fmt" ,fmt-for-irods)
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("json" ,json-modern-cxx)
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("libarchive" ,libarchive)
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("libcxxabi" ,libcxxabi-6) ; we need this for linking with -lc++abi
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("linux-pam" ,linux-pam)
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("mit-krb5" ,mit-krb5)
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("nanodbc" ,nanodbc-for-irods)
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("openssl" ,openssl)
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("python" ,python-wrapper)
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("unixodbc" ,unixodbc)
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("zeromq" ,zeromq)))
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(native-inputs
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`(("catch2" ,catch-framework2)
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("clang" ,clang-toolchain-6)
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("clang-runtime" ,clang-runtime-6)
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("libcxx+libcxxabi" ,libcxx+libcxxabi-6)))
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(home-page "https://irods.org")
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(synopsis "Data management software")
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(description "The Integrated Rule-Oriented Data System (iRODS) is data
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management software. iRODS virtualizes data storage resources, so users can
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take control of their data, regardless of where and on what device the data is
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stored.")
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(license license:bsd-3)))
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2021-04-23 14:32:01 +00:00
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(define-public irods-client-icommands
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(package
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(name "irods-client-icommands")
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(version "4.2.8")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/irods/irods_client_icommands")
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(commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"069n647p5ypf44gim8z26mwayg5lzgk7r9qyyqd8f9n7h0p4jxpn"))))
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(build-system cmake-build-system)
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(arguments
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`(#:tests? #false ; not clear how to run tests
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#:configure-flags
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(list
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"-DCMAKE_BUILD_TYPE=Release"
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;; Configuration attempts to guess the distribution with Python.
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"-DIRODS_LINUX_DISTRIBUTION_NAME=guix"
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"-DIRODS_LINUX_DISTRIBUTION_VERSION_MAJOR=1"
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(string-append "-DIRODS_DIR="
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(assoc-ref %build-inputs "irods")
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"/lib/irods/cmake")
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(string-append "-DIRODS_EXTERNALS_FULLPATH_CLANG="
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(assoc-ref %build-inputs "clang"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_CLANG_RUNTIME="
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(assoc-ref %build-inputs "clang-runtime"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_CPPZMQ="
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(assoc-ref %build-inputs "cppzmq"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_ARCHIVE="
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(assoc-ref %build-inputs "libarchive"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_AVRO="
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(assoc-ref %build-inputs "avro-cpp"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_BOOST="
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(assoc-ref %build-inputs "boost"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_ZMQ="
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(assoc-ref %build-inputs "zeromq"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_JSON="
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(assoc-ref %build-inputs "json"))
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(string-append "-DIRODS_EXTERNALS_FULLPATH_FMT="
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(assoc-ref %build-inputs "fmt")))
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#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'unset-Werror ;
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(lambda _ ;
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;; -Werror kills the build due to a deprecation warning
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(substitute* "CMakeLists.txt" ;
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(("-Werror") ""))))
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(add-after 'unpack 'remove-/usr-prefix
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(lambda _
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(substitute* "CMakeLists.txt"
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(("usr/") ""))))
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(add-after 'set-paths 'adjust-CPLUS_INCLUDE_PATH
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(lambda* (#:key inputs #:allow-other-keys)
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(let ((gcc (assoc-ref inputs "gcc")))
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(setenv "CPLUS_INCLUDE_PATH"
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(string-join
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(cons* (string-append (assoc-ref inputs "libcxx+libcxxabi")
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"/include/c++/v1")
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(string-append (assoc-ref inputs "json")
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"/include/nlohmann")
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;; Hide GCC's C++ headers so that they do not interfere with
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;; the Clang headers.
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(delete (string-append gcc "/include/c++")
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(string-split (getenv "CPLUS_INCLUDE_PATH")
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#\:)))
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":"))
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(format #true
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"environment variable `CPLUS_INCLUDE_PATH' changed to ~a~%"
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(getenv "CPLUS_INCLUDE_PATH"))))))))
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(inputs
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`(("avro-cpp" ,avro-cpp-1.9-for-irods)
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("boost" ,boost-for-irods)
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("cppzmq" ,cppzmq)
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("fmt" ,fmt-for-irods)
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("irods" ,irods)
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("json" ,json-modern-cxx)
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("libarchive" ,libarchive)
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("libcxxabi" ,libcxxabi-6) ; we need this for linking with -lc++abi
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("mit-krb5" ,mit-krb5)
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("openssl" ,openssl)
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("zeromq" ,zeromq)))
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(native-inputs
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`(("clang" ,clang-toolchain-6)
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("clang-runtime" ,clang-runtime-6)
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("libcxx+libcxxabi" ,libcxx+libcxxabi-6)
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("help2man" ,help2man)
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("which" ,which)))
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(home-page "https://irods.org")
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(synopsis "Data management software")
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(description "The Integrated Rule-Oriented Data System (iRODS) is data
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management software. iRODS virtualizes data storage resources, so users can
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take control of their data, regardless of where and on what device the data is
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stored.")
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(license license:bsd-3)))
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