gnu: r-snplocs-hsapiens-dbsnp144-grch37: Move to annotation section.
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): Move this variable up to the annotation section.
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					 1 changed files with 38 additions and 38 deletions
				
			
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					@ -775,6 +775,44 @@ Ensembl.")
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Ensembl.")
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					Ensembl.")
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    (license license:artistic2.0)))
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					    (license license:artistic2.0)))
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					(define-public r-snplocs-hsapiens-dbsnp144-grch37
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					  (package
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					    (name "r-snplocs-hsapiens-dbsnp144-grch37")
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					    (version "0.99.20")
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					    (source (origin
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					              (method url-fetch)
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					              (uri (bioconductor-uri "SNPlocs.Hsapiens.dbSNP144.GRCh37"
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					                                     version 'annotation))
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					              (sha256
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					               (base32
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					                "1z8kx43ki1jvj7ms7pcybakcdimfwr6zpjvspkjmma97bdz093iz"))))
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					    (build-system r-build-system)
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					    ;; As this package provides little more than a very large data file it
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					    ;; doesn't make sense to build substitutes.
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					    (arguments `(#:substitutable? #f))
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					    (propagated-inputs
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					     (list r-biocgenerics
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					           r-s4vectors
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					           r-iranges
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					           r-genomeinfodb
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					           r-genomicranges
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					           r-bsgenome
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					           r-biostrings))
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					    (home-page
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					     "https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP144.GRCh37/")
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					    (synopsis "SNP locations for Homo sapiens (dbSNP Build 144)")
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					    (description "This package provides SNP locations and alleles for Homo
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					sapiens extracted from NCBI dbSNP Build 144.  The source data files used for
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					this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped
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					to reference genome GRCh37.p13.  Note that the GRCh37.p13 genome is a
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					patched version of GRCh37.  However the patch doesn't alter chromosomes 1-22,
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					X, Y, MT.  GRCh37 itself is the same as the hg19 genome from UCSC *except* for
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					the mitochondrion chromosome.  Therefore, the SNPs in this package can be
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					injected in @code{BSgenome.Hsapiens.UCSC.hg19} and they will land at the
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					correct position but this injection will exclude chrM (i.e. nothing will be
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					injected in that sequence).")
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					    (license license:artistic2.0)))
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(define-public r-txdb-dmelanogaster-ucsc-dm6-ensgene
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					(define-public r-txdb-dmelanogaster-ucsc-dm6-ensgene
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  (package
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					  (package
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    (name "r-txdb-dmelanogaster-ucsc-dm6-ensgene")
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					    (name "r-txdb-dmelanogaster-ucsc-dm6-ensgene")
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					@ -11271,44 +11309,6 @@ and parameters of which are trained on a set of aligned reads and a reference
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genome sequence.")
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					genome sequence.")
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    (license license:lgpl3)))
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					    (license license:lgpl3)))
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(define-public r-snplocs-hsapiens-dbsnp144-grch37
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  (package
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    (name "r-snplocs-hsapiens-dbsnp144-grch37")
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    (version "0.99.20")
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					 | 
				
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    (source (origin
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              (method url-fetch)
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              (uri (bioconductor-uri "SNPlocs.Hsapiens.dbSNP144.GRCh37"
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                                     version 'annotation))
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              (sha256
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               (base32
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                "1z8kx43ki1jvj7ms7pcybakcdimfwr6zpjvspkjmma97bdz093iz"))))
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					 | 
				
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    (build-system r-build-system)
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					 | 
				
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    ;; As this package provides little more than a very large data file it
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					 | 
				
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    ;; doesn't make sense to build substitutes.
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					 | 
				
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    (arguments `(#:substitutable? #f))
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					 | 
				
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    (propagated-inputs
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					 | 
				
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     (list r-biocgenerics
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					 | 
				
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           r-s4vectors
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					 | 
				
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           r-iranges
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					 | 
				
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           r-genomeinfodb
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					 | 
				
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           r-genomicranges
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           r-bsgenome
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					 | 
				
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           r-biostrings))
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					 | 
				
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    (home-page
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     "https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP144.GRCh37/")
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					 | 
				
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    (synopsis "SNP locations for Homo sapiens (dbSNP Build 144)")
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					 | 
				
			||||||
    (description "This package provides SNP locations and alleles for Homo
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					 | 
				
			||||||
sapiens extracted from NCBI dbSNP Build 144.  The source data files used for
 | 
					 | 
				
			||||||
this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped
 | 
					 | 
				
			||||||
to reference genome GRCh37.p13.  Note that the GRCh37.p13 genome is a
 | 
					 | 
				
			||||||
patched version of GRCh37.  However the patch doesn't alter chromosomes 1-22,
 | 
					 | 
				
			||||||
X, Y, MT.  GRCh37 itself is the same as the hg19 genome from UCSC *except* for
 | 
					 | 
				
			||||||
the mitochondrion chromosome.  Therefore, the SNPs in this package can be
 | 
					 | 
				
			||||||
injected in @code{BSgenome.Hsapiens.UCSC.hg19} and they will land at the
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					 | 
				
			||||||
correct position but this injection will exclude chrM (i.e. nothing will be
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					 | 
				
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injected in that sequence).")
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					 | 
				
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    (license license:artistic2.0)))
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					 | 
				
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					 | 
				
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(define-public r-reqon
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					(define-public r-reqon
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  (package
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					  (package
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    (name "r-reqon")
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					    (name "r-reqon")
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