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gnu: Add seqPattern.

* gnu/packages/bioinformatics.scm (r-seqpattern): New variable.
master
Ricardo Wurmus 2015-12-23 17:34:45 +01:00
parent c43a011de3
commit 03ea5a357e
1 changed files with 26 additions and 0 deletions

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@ -3886,6 +3886,32 @@ genome data packages and support for efficient SNP representation.")
microarray data, using nearest neighbor averaging.")
(license license:gpl2+)))
(define-public r-seqpattern
(package
(name "r-seqpattern")
(version "1.2.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "seqPattern" version))
(sha256
(base32
"0p9zj6bic7sa0hb2bjm988kkk5n9r1kvlbqkzvy702f642n0j53i"))))
(properties
`((upstream-name . "seqPattern")))
(build-system r-build-system)
(propagated-inputs
`(("r-biostrings" ,r-biostrings)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-plotrix" ,r-plotrix)))
(home-page "http://bioconductor.org/packages/seqPattern")
(synopsis "Visualising oligonucleotide patterns and motif occurrences")
(description
"This package provides tools to visualize oligonucleotide patterns and
sequence motif occurrences across a large set of sequences centred at a common
reference point and sorted by a user defined feature.")
(license license:gpl3+)))
(define-public r-qtl
(package
(name "r-qtl")