gnu: r-rhtslib: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-rhtslib): Move from here... * gnu/packages/bioconductor.scm (r-rhtslib): ...to here.master
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@ -39,6 +39,7 @@
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#:use-module (gnu packages boost)
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#:use-module (gnu packages boost)
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#:use-module (gnu packages cran)
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#:use-module (gnu packages cran)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages curl)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages graph)
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#:use-module (gnu packages graph)
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#:use-module (gnu packages graphviz)
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#:use-module (gnu packages graphviz)
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@ -3037,6 +3038,37 @@ Enrichment Analysis} (GSEA).")
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the Human Protein Atlas project.")
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the Human Protein Atlas project.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-rhtslib
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(package
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(name "r-rhtslib")
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(version "1.22.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "Rhtslib" version))
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(sha256
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(base32
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"18wag2jnpda6078xjkpfdvar1gkb2myhw83gg03l39sabh35qya4"))))
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(properties `((upstream-name . "Rhtslib")))
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(build-system r-build-system)
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;; Without this a temporary directory ends up in the Rhtslib.so binary,
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;; which makes R abort the build.
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(arguments '(#:configure-flags '("--no-staged-install")))
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(propagated-inputs
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`(("curl" ,curl)
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("zlib" ,zlib) ; packages using rhtslib need to link with zlib
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("r-zlibbioc" ,r-zlibbioc)))
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(native-inputs
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`(("pkg-config" ,pkg-config)
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("r-knitr" ,r-knitr)))
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(home-page "https://github.com/nhayden/Rhtslib")
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(synopsis "High-throughput sequencing library as an R package")
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(description
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"This package provides the HTSlib C library for high-throughput
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nucleotide sequence analysis. The package is primarily useful to developers
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of other R packages who wish to make use of HTSlib.")
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(license license:lgpl2.0+)))
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(define-public r-impute
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(define-public r-impute
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(package
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(package
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(name "r-impute")
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(name "r-impute")
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@ -8046,37 +8046,6 @@ characteristic tag shift values in these assays.")
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secondary structure and comparative analysis in R.")
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secondary structure and comparative analysis in R.")
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(license license:gpl3+)))
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(license license:gpl3+)))
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(define-public r-rhtslib
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(package
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(name "r-rhtslib")
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(version "1.22.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "Rhtslib" version))
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(sha256
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(base32
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"18wag2jnpda6078xjkpfdvar1gkb2myhw83gg03l39sabh35qya4"))))
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(properties `((upstream-name . "Rhtslib")))
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(build-system r-build-system)
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;; Without this a temporary directory ends up in the Rhtslib.so binary,
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;; which makes R abort the build.
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(arguments '(#:configure-flags '("--no-staged-install")))
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(propagated-inputs
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`(("curl" ,curl)
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("zlib" ,zlib) ; packages using rhtslib need to link with zlib
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("r-zlibbioc" ,r-zlibbioc)))
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(native-inputs
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`(("pkg-config" ,pkg-config)
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("r-knitr" ,r-knitr)))
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(home-page "https://github.com/nhayden/Rhtslib")
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(synopsis "High-throughput sequencing library as an R package")
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(description
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"This package provides the HTSlib C library for high-throughput
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nucleotide sequence analysis. The package is primarily useful to developers
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of other R packages who wish to make use of HTSlib.")
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(license license:lgpl2.0+)))
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(define-public r-bamsignals
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(define-public r-bamsignals
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(package
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(package
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(name "r-bamsignals")
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(name "r-bamsignals")
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