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gnu: Add r-microbiome.

* gnu/packages/bioconductor.scm (r-microbiome): New variable.
master
Mădălin Ionel Patrașcu 2022-06-19 22:42:00 +02:00 committed by Ricardo Wurmus
parent 49e1a3a04b
commit 04f8295f6f
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@ -9736,6 +9736,43 @@ to identify differentially methylated regions in epigenetic epidemiology
studies.")
(license license:artistic2.0)))
(define-public r-microbiome
(package
(name "r-microbiome")
(version "1.18.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "microbiome" version))
(sha256
(base32
"1z9arkjp5xszlg07mzb4p163i74jfbd9p4gbwv5syivnpl040k12"))))
(properties `((upstream-name . "microbiome")))
(build-system r-build-system)
(propagated-inputs
(list r-biostrings
r-compositions
r-dplyr
r-ggplot2
r-phyloseq
r-reshape2
r-rtsne
r-scales
r-tibble
r-tidyr
r-vegan))
(native-inputs (list r-knitr))
(home-page "https://microbiome.github.io/microbiome/")
(synopsis "Tools for microbiome analysis")
(description
"This package facilitates phyloseq exploration and analysis of taxonomic
profiling data. This package provides tools for the manipulation, statistical
analysis, and visualization of taxonomic profiling data. In addition to
targeted case-control studies, microbiome facilitates scalable exploration of
population cohorts. This package supports the independent phyloseq data
format and expands the available toolkit in order to facilitate the
standardization of the analyses and the development of best practices.")
(license license:bsd-2)))
(define-public r-milor
(package
(name "r-milor")