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gnu: filtlong: Use gexp.

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* gnu/packages/bioinformatics.scm (filtlong)[arguments]: Use gexp.
This commit is contained in:
Ricardo Wurmus 2023-01-06 14:05:58 +01:00
parent 0070e52ade
commit 067c8a7445
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GPG key ID: 197A5888235FACAC
1 changed files with 22 additions and 23 deletions
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gnu/packages/bioinformatics.scm
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@ -14321,29 +14321,28 @@ phase + query phase).")
(base32 "1xr92r820x8qlkcr3b57iw223yq8vjgyi42jr79w2xgw47qzr575"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; no check target
#:phases
(modify-phases %standard-phases
(delete 'configure)
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin"))
(scripts (string-append out "/share/filtlong/scripts")))
(install-file "bin/filtlong" bin)
(install-file "scripts/histogram.py" scripts)
(install-file "scripts/read_info_histograms.sh" scripts))))
(add-after 'install 'wrap-program
(lambda* (#:key inputs outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(path (getenv "GUIX_PYTHONPATH")))
(wrap-program (string-append out
"/share/filtlong/scripts/histogram.py")
`("GUIX_PYTHONPATH" ":" prefix (,path))))))
(add-before 'check 'patch-tests
(lambda _
(substitute* "scripts/read_info_histograms.sh"
(("awk") (which "gawk"))))))))
(list
#:tests? #f ; no check target
#:phases
#~(modify-phases %standard-phases
(delete 'configure)
(replace 'install
(lambda _
(let ((bin (string-append #$output "/bin"))
(scripts (string-append #$output "/share/filtlong/scripts")))
(install-file "bin/filtlong" bin)
(install-file "scripts/histogram.py" scripts)
(install-file "scripts/read_info_histograms.sh" scripts))))
(add-after 'install 'wrap-program
(lambda _
(let ((path (getenv "GUIX_PYTHONPATH")))
(wrap-program (string-append #$output
"/share/filtlong/scripts/histogram.py")
`("GUIX_PYTHONPATH" ":" prefix (,path))))))
(add-before 'check 'patch-tests
(lambda _
(substitute* "scripts/read_info_histograms.sh"
(("awk") (which "gawk"))))))))
(inputs
(list gawk ;for read_info_histograms.sh
python-2 ;required for histogram.py