gnu: dealii-openmpi: Add Trilinos dependency.
* gnu/packages/maths.scm (trilinos-for-dealii-openmpi): New variable. (dealii-openmpi)[propagated-inputs]: Add trilinos-for-dealii-openmpi. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Paul A. Patience
Ludovic Courtès
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fa81971cba
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06c11434c9
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@ -4646,6 +4646,154 @@ specifications.")
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revised simplex and the branch-and-bound methods.")
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revised simplex and the branch-and-bound methods.")
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(license license:lgpl2.1+)))
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(license license:lgpl2.1+)))
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;; Private Trilinos package for dealii-openmpi (similar to
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;; trilinos-serial-xyce and trilinos-parallel-xyce).
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;; This version is the latest known to be compatible with deal.II [1].
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;; Since the latest version of Trilinos is not necessarily supported by
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;; deal.II, it may be worth keeping this package even if and when Trilinos
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;; gets packaged separately for Guix (unless various versions of Trilinos are
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;; packaged).
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;;
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;; An insightful source of information for building Trilinos for deal.II lies
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;; in the Trilinos package for candi [2], which is a source-based installer
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;; for deal.II and its dependencies.
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;;
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;; [1]: https://www.dealii.org/current/external-libs/trilinos.html
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;; [2]: https://github.com/dealii/candi/blob/master/deal.II-toolchain/packages/trilinos.package
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(define trilinos-for-dealii-openmpi
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(package
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(name "trilinos-for-dealii-openmpi")
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(version "12.18.1")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/trilinos/Trilinos/")
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(commit
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(string-append "trilinos-release-"
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(string-replace-substring version "." "-")))))
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(file-name (git-file-name "trilinos" version))
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(sha256
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(base32 "0fnwlhzsh85qj38cq3igbs8nm1b2jdgr2z734sapmyyzsy21mkgp"))))
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(build-system cmake-build-system)
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(native-inputs
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`(("gfortran" ,gfortran)
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;; Trilinos's repository contains several C-shell scripts, but adding
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;; tcsh to the native inputs does not result in the check phase running
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;; any more tests than without it (nor is tcsh required to build
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;; Trilinos).
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;; It seems that Trilinos has replaced its use of C-shell test scripts
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;; with CMake's testing facilities.
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;; For example,
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;; packages/zoltan/doc/Zoltan_html/dev_html/dev_test_script.html [1]
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;; states that Zoltan's C-shell test script
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;; packages/zoltan/test/test_zoltan has been obsoleted by the tests now
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;; performed through CMake.
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;;
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;; Perl is required for some Zoltan tests and Python 2 for one ML test.
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;;
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;; [1]: https://cs.sandia.gov/zoltan/dev_html/dev_test_script.html
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("perl" ,perl)
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("python" ,python-2)))
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(inputs
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`(("blas" ,openblas)
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("lapack" ,lapack)
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("mumps" ,mumps-openmpi)
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("scalapack" ,scalapack)))
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(propagated-inputs
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`(("mpi" ,openmpi)))
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(arguments
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`(#:build-type "Release"
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#:configure-flags
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`("-DBUILD_SHARED_LIBS=ON"
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;; Obtain the equivalent of RelWithDebInfo but with -O3 (the Release
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;; default) rather than -O2 (the RelWithDebInfo default), to conform
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;; to candi's trilinos.package's compilation flags, which are -g -O3.
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"-DCMAKE_C_FLAGS=-g"
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"-DCMAKE_CXX_FLAGS=-g"
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"-DCMAKE_Fortran_FLAGS=-g"
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;; Trilinos libraries that deal.II can interface with.
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"-DTrilinos_ENABLE_Amesos=ON"
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"-DTrilinos_ENABLE_AztecOO=ON"
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"-DTrilinos_ENABLE_Epetra=ON"
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"-DTrilinos_ENABLE_EpetraExt=ON"
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"-DTrilinos_ENABLE_Ifpack=ON"
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"-DTrilinos_ENABLE_ML=ON"
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"-DTrilinos_ENABLE_MueLu=ON"
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"-DTrilinos_ENABLE_ROL=ON"
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;; Optional; required for deal.II's GridIn::read_exodusii, but
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;; depends on netcdf.
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;; Enable if and when someone needs it.
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;;"-DTrilinos_ENABLE_SEACAS=ON"
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"-DTrilinos_ENABLE_Sacado=ON"
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"-DTrilinos_ENABLE_Teuchos=ON"
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"-DTrilinos_ENABLE_Tpetra=ON"
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"-DTrilinos_ENABLE_Zoltan=ON"
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;; Third-party libraries (TPLs) that Trilinos can interface with.
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"-DBLAS_LIBRARY_NAMES=openblas"
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"-DTPL_ENABLE_MPI=ON"
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"-DTPL_ENABLE_MUMPS=ON"
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"-DTPL_ENABLE_SCALAPACK=ON"
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;; Enable the tests but not the examples (which are enabled by
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;; default when enabling tests).
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;; Although some examples are run as tests, they are otherwise
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;; unnecessary since this is a private package meant for
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;; dealii-openmpi.
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;; Besides, some MueLu and ROL examples require a lot of memory to
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;; compile.
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;;
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;; (For future reference, note that some ROL and SEACAS examples
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;; require removing gfortran from CPLUS_INCLUDE_PATH as in the
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;; dune-istl, dune-localfunctions and dune-alugrid packages.)
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"-DTrilinos_ENABLE_TESTS=ON"
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"-DTrilinos_ENABLE_EXAMPLES=OFF"
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;; MueLu tests require considerably more time and memory to compile
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;; than the rest of the tests.
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"-DMueLu_ENABLE_TESTS=OFF"
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;; The following options were gleaned from candi's trilinos.package.
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;; (We do not enable the complex instantiations, which are anyway
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;; provided only as an option in trilinos.package, because they are
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;; costly in compilation time and memory usage, and disk space [1].)
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;;
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;; [1]: https://www.docs.trilinos.org/files/TrilinosBuildReference.html#enabling-float-and-complex-scalar-types
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"-DTrilinos_ENABLE_Ifpack2=OFF"
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"-DTeuchos_ENABLE_FLOAT=ON"
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"-DTpetra_INST_INT_LONG=ON"
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"-DTPL_ENABLE_Boost=OFF")
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#:phases
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(modify-phases %standard-phases
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(add-after 'configure 'fix-kokkos-config
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(lambda _
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;; GNU Make 4.3 accidentally leaves the backslash preceding the
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;; number sign in strings containing a literal backslash–number
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;; sign (\#) [1, 2].
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;; This is still an issue in Trilinos 13.0.1, but should be fixed
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;; in the following version.
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;; (The latest versions of Kokkos incorporate the fix [2].)
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;;
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;; [1]: https://github.com/GEOSX/thirdPartyLibs/issues/136
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;; [2]: https://github.com/kokkos/kokkos/blob/3.4.00/Makefile.kokkos#L441
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(substitute* "KokkosCore_config.h"
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(("\\\\#") "#"))
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#t))
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(add-before 'check 'mpi-setup
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,%openmpi-setup))))
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(home-page "https://trilinos.github.io/")
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(synopsis "Algorithms for engineering and scientific problems")
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(description
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"The Trilinos Project is an effort to develop algorithms and enabling
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technologies within an object-oriented software framework for the solution of
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large-scale, complex multi-physics engineering and scientific problems.
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A unique design feature of Trilinos is its focus on packages.")
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;; The packages are variously licensed under more than just BSD-3 and
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;; LGPL-2.1+, but all the licenses are either BSD- or LGPL-compatible.
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;; See https://trilinos.github.io/license.html.
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(license (list license:bsd-3 license:lgpl2.1+))))
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(define-public dealii
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(define-public dealii
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(package
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(package
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(name "dealii")
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(name "dealii")
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@ -4741,6 +4889,7 @@ in finite element programs.")
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("p4est" ,p4est-openmpi)
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("p4est" ,p4est-openmpi)
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("petsc" ,petsc-openmpi)
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("petsc" ,petsc-openmpi)
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("slepc" ,slepc-openmpi)
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("slepc" ,slepc-openmpi)
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("trilinos" ,trilinos-for-dealii-openmpi)
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,@(alist-delete "hdf5" (package-propagated-inputs dealii))))
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,@(alist-delete "hdf5" (package-propagated-inputs dealii))))
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(arguments
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(arguments
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(substitute-keyword-arguments (package-arguments dealii)
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(substitute-keyword-arguments (package-arguments dealii)
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