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gnu: r-edger: Move to (gnu packages bioconductor).

* gnu/packages/bioinformatics.scm (r-edger): Move from here...
* gnu/packages/bioconductor.scm (r-edger): ...to here.
master
zimoun 2021-03-15 14:01:34 +01:00 committed by Ricardo Wurmus
parent 35b62c044e
commit 082f3c5433
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2 changed files with 28 additions and 28 deletions

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@ -1684,6 +1684,34 @@ testing. The package also provides functions for the visualization and
exploration of the results.")
(license license:gpl3+)))
(define-public r-edger
(package
(name "r-edger")
(version "3.32.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "edgeR" version))
(sha256
(base32
"1gaic8qf6a6sy0bmydh1xzf52w0wnq31aanpvw3a30pfsi218bcp"))))
(properties `((upstream-name . "edgeR")))
(build-system r-build-system)
(propagated-inputs
`(("r-limma" ,r-limma)
("r-locfit" ,r-locfit)
("r-rcpp" ,r-rcpp)
("r-statmod" ,r-statmod))) ;for estimateDisp
(home-page "http://bioinf.wehi.edu.au/edgeR")
(synopsis "EdgeR does empirical analysis of digital gene expression data")
(description "This package can do differential expression analysis of
RNA-seq expression profiles with biological replication. It implements a range
of statistical methodology based on the negative binomial distributions,
including empirical Bayes estimation, exact tests, generalized linear models
and quasi-likelihood tests. It be applied to differential signal analysis of
other types of genomic data that produce counts, including ChIP-seq, SAGE and
CAGE.")
(license license:gpl2+)))
(define-public r-genefilter
(package
(name "r-genefilter")

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@ -7691,34 +7691,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
(define-public r-edger
(package
(name "r-edger")
(version "3.32.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "edgeR" version))
(sha256
(base32
"1gaic8qf6a6sy0bmydh1xzf52w0wnq31aanpvw3a30pfsi218bcp"))))
(properties `((upstream-name . "edgeR")))
(build-system r-build-system)
(propagated-inputs
`(("r-limma" ,r-limma)
("r-locfit" ,r-locfit)
("r-rcpp" ,r-rcpp)
("r-statmod" ,r-statmod))) ;for estimateDisp
(home-page "http://bioinf.wehi.edu.au/edgeR")
(synopsis "EdgeR does empirical analysis of digital gene expression data")
(description "This package can do differential expression analysis of
RNA-seq expression profiles with biological replication. It implements a range
of statistical methodology based on the negative binomial distributions,
including empirical Bayes estimation, exact tests, generalized linear models
and quasi-likelihood tests. It be applied to differential signal analysis of
other types of genomic data that produce counts, including ChIP-seq, SAGE and
CAGE.")
(license license:gpl2+)))
(define-public r-variantannotation
(package
(name "r-variantannotation")