gnu: r-edger: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-edger): Move from here... * gnu/packages/bioconductor.scm (r-edger): ...to here.
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2 changed files with 28 additions and 28 deletions
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@ -1684,6 +1684,34 @@ testing. The package also provides functions for the visualization and
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exploration of the results.")
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exploration of the results.")
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(license license:gpl3+)))
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(license license:gpl3+)))
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(define-public r-edger
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(package
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(name "r-edger")
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(version "3.32.1")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "edgeR" version))
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(sha256
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(base32
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"1gaic8qf6a6sy0bmydh1xzf52w0wnq31aanpvw3a30pfsi218bcp"))))
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(properties `((upstream-name . "edgeR")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-limma" ,r-limma)
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("r-locfit" ,r-locfit)
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("r-rcpp" ,r-rcpp)
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("r-statmod" ,r-statmod))) ;for estimateDisp
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(home-page "http://bioinf.wehi.edu.au/edgeR")
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(synopsis "EdgeR does empirical analysis of digital gene expression data")
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(description "This package can do differential expression analysis of
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RNA-seq expression profiles with biological replication. It implements a range
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of statistical methodology based on the negative binomial distributions,
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including empirical Bayes estimation, exact tests, generalized linear models
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and quasi-likelihood tests. It be applied to differential signal analysis of
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other types of genomic data that produce counts, including ChIP-seq, SAGE and
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CAGE.")
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(license license:gpl2+)))
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(define-public r-genefilter
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(define-public r-genefilter
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(package
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(package
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(name "r-genefilter")
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(name "r-genefilter")
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@ -7691,34 +7691,6 @@ including VCF header and contents in RDF and JSON.")
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(home-page "https://github.com/vcflib/bio-vcf")
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(home-page "https://github.com/vcflib/bio-vcf")
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(license license:expat)))
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(license license:expat)))
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(define-public r-edger
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(package
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(name "r-edger")
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(version "3.32.1")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "edgeR" version))
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(sha256
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(base32
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"1gaic8qf6a6sy0bmydh1xzf52w0wnq31aanpvw3a30pfsi218bcp"))))
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(properties `((upstream-name . "edgeR")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-limma" ,r-limma)
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("r-locfit" ,r-locfit)
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("r-rcpp" ,r-rcpp)
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("r-statmod" ,r-statmod))) ;for estimateDisp
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(home-page "http://bioinf.wehi.edu.au/edgeR")
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(synopsis "EdgeR does empirical analysis of digital gene expression data")
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(description "This package can do differential expression analysis of
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RNA-seq expression profiles with biological replication. It implements a range
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of statistical methodology based on the negative binomial distributions,
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including empirical Bayes estimation, exact tests, generalized linear models
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and quasi-likelihood tests. It be applied to differential signal analysis of
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other types of genomic data that produce counts, including ChIP-seq, SAGE and
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CAGE.")
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(license license:gpl2+)))
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(define-public r-variantannotation
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(define-public r-variantannotation
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(package
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(package
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(name "r-variantannotation")
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(name "r-variantannotation")
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