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@ -4808,6 +4808,28 @@ domains etc.) from quantification of all types of RNASeq by tools such as
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Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.")
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Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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;; This is a CRAN package, but it depends on qvalue from Bioconductor.
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(define-public r-isva
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(package
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(name "r-isva")
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(version "1.9")
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(source (origin
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(method url-fetch)
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(uri (cran-uri "isva" version))
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(sha256
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(base32
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"05qx9q0kg4ma23v4abhihw0vz017nq6hv2jzsiqx4d20ngh1dl4z"))))
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(properties `((upstream-name . "isva")))
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(build-system r-build-system)
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(propagated-inputs (list r-fastica r-jade r-qvalue))
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(home-page "https://cran.r-project.org/package=isva")
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(synopsis "Independent surrogate variable analysis")
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(description
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"Independent Surrogate Variable Analysis is an algorithm for feature
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selection in the presence of potential confounding factors (see Teschendorff
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AE et al 2011, <doi: 10.1093/bioinformatics/btr171>).")
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(license license:gpl2)))
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(define-public r-italics
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(define-public r-italics
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(package
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(package
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(name "r-italics")
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(name "r-italics")
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