gnu: Add r-ruvseq.
* gnu/packages/bioconductor.scm (r-ruvseq): New variable.
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@ -913,3 +913,29 @@ can be analyzed regarding their minimal, maximal and average distances between
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barcodes. Finally, reads that start with a (possibly mutated) barcode can be
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barcodes. Finally, reads that start with a (possibly mutated) barcode can be
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demultiplexed, i.e. assigned to their original reference barcode.")
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demultiplexed, i.e. assigned to their original reference barcode.")
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(license license:gpl2)))
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(license license:gpl2)))
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(define-public r-ruvseq
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(package
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(name "r-ruvseq")
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(version "1.14.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "RUVSeq" version))
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(sha256
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(base32
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"16i5sm5af761k4zvspfi8jknsgln48bn538hxqqmlaq7wvlfxqxj"))))
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(properties `((upstream-name . "RUVSeq")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-edaseq" ,r-edaseq)
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("r-edger" ,r-edger)
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("r-mass" ,r-mass)))
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(home-page "https://github.com/drisso/RUVSeq")
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(synopsis "Remove unwanted variation from RNA-Seq data")
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(description
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"This package implements methods to @dfn{remove unwanted variation} (RUV)
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of Risso et al. (2014) for the normalization of RNA-Seq read counts between
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samples.")
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(license license:artistic2.0)))
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