gnu: r-genomicfiles: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genomicfiles): Move from here... * gnu/packages/bioconductor.scm (r-genomicfiles): ...to here.master
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@ -2751,6 +2751,40 @@ transcripts, exons, cds and genes. Flexible methods are provided for
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extracting the desired features in a convenient format.")
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(license license:artistic2.0)))
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(define-public r-genomicfiles
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(package
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(name "r-genomicfiles")
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(version "1.26.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "GenomicFiles" version))
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(sha256
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(base32
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"0awnf0m1pz7cw9wvh9cfxz9k7xm6wnvjm7xbxf139lrhd4nlyqjz"))))
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(properties `((upstream-name . "GenomicFiles")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-biocparallel" ,r-biocparallel)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicalignments" ,r-genomicalignments)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-matrixgenerics" ,r-matrixgenerics)
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("r-rsamtools" ,r-rsamtools)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-summarizedexperiment" ,r-summarizedexperiment)
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("r-variantannotation" ,r-variantannotation)))
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(home-page "https://bioconductor.org/packages/GenomicFiles")
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(synopsis "Distributed computing by file or by range")
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(description
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"This package provides infrastructure for parallel computations
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distributed by file or by range. User defined mapper and reducer functions
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provide added flexibility for data combination and manipulation.")
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(license license:artistic2.0)))
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(define-public r-genomicranges
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(package
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(name "r-genomicranges")
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@ -9168,40 +9168,6 @@ their variance is independent of the mean, and they are usually more sensitive
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and specific in detecting differential transcription.")
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(license license:artistic2.0)))
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(define-public r-genomicfiles
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(package
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(name "r-genomicfiles")
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(version "1.26.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "GenomicFiles" version))
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(sha256
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(base32
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"0awnf0m1pz7cw9wvh9cfxz9k7xm6wnvjm7xbxf139lrhd4nlyqjz"))))
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(properties `((upstream-name . "GenomicFiles")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-biocparallel" ,r-biocparallel)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicalignments" ,r-genomicalignments)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-matrixgenerics" ,r-matrixgenerics)
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("r-rsamtools" ,r-rsamtools)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-summarizedexperiment" ,r-summarizedexperiment)
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("r-variantannotation" ,r-variantannotation)))
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(home-page "https://bioconductor.org/packages/GenomicFiles")
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(synopsis "Distributed computing by file or by range")
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(description
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"This package provides infrastructure for parallel computations
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distributed by file or by range. User defined mapper and reducer functions
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provide added flexibility for data combination and manipulation.")
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(license license:artistic2.0)))
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(define-public r-dirichletmultinomial
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(package
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(name "r-dirichletmultinomial")
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