gnu: Add python-slamdunk.
* gnu/packages/bioinformatics.scm (python-slamdunk): New variable.
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@ -7012,6 +7012,38 @@ Values such as sequence name, sequence description, sequence quality and the
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sequence itself can be retrieved from these databases.")
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sequence itself can be retrieved from these databases.")
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(license license:bsd-3)))
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(license license:bsd-3)))
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(define-public python-slamdunk
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(package
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(name "python-slamdunk")
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(version "0.4.3")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/t-neumann/slamdunk")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0lv3h5k2pn1pz35kz0wk5xmricxzy8qscs2y7nwh0k6x4pn0m0s5"))))
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(build-system python-build-system)
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(propagated-inputs
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(list python-biopython
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python-intervaltree
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python-joblib
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python-pandas
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python-pybedtools
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python-pysam))
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(native-inputs
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(list python-cython python-pytest))
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(home-page "https://t-neumann.github.io/slamdunk/")
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(synopsis "Streamline SLAM-seq analysis with high sensitivity")
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(description "SlamDunk is a fully automated tool for automated, robust,
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scalable and reproducible SLAMseq data analysis. Diagnostic plotting features
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and a MultiQC plugin will make your SLAMseq data ready for immediate QA and
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interpretation.")
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(license license:agpl3+)))
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(define-public python-taggd
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(define-public python-taggd
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(package
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(package
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(name "python-taggd")
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(name "python-taggd")
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