gnu: Add r-scuttle.
* gnu/packages/bioconductor.scm (r-scuttle): New variable.
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@ -8837,6 +8837,40 @@ factors for each cell, along with the usual metadata for genes and
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libraries.")
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(license license:gpl3)))
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(define-public r-scuttle
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(package
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(name "r-scuttle")
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(version "1.0.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "scuttle" version))
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(sha256
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(base32
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"1k8q3wzq6f6j6wkjp9fy9j214rv98kyvcxnpavk6blqgaxjqwdr6"))))
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(properties `((upstream-name . "scuttle")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-beachmat" ,r-beachmat)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocparallel" ,r-biocparallel)
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("r-delayedarray" ,r-delayedarray)
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("r-delayedmatrixstats" ,r-delayedmatrixstats)
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("r-matrix" ,r-matrix)
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("r-rcpp" ,r-rcpp)
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("r-s4vectors" ,r-s4vectors)
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("r-singlecellexperiment" ,r-singlecellexperiment)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(native-inputs `(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/scuttle")
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(synopsis "Single-cell RNA-Seq analysis utilities")
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(description
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"This package provides basic utility functions for performing single-cell
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analyses, focusing on simple normalization, quality control and data
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transformations. It also provides some helper functions to assist development
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of other packages.")
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(license license:gpl3)))
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(define-public r-scater
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(package
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(name "r-scater")
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