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gnu: Add r-mbecs.

* gnu/packages/bioconductor.scm (r-mbecs): New variable.
master
Mădălin Ionel Patrașcu 2023-05-30 15:37:50 +02:00 committed by Ricardo Wurmus
parent 13e2138c23
commit 10d3f8aa7b
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@ -10118,6 +10118,57 @@ package comprehensively addressing issues ranging from post-alignments
processing to visualization and annotation.")
(license license:gpl2)))
(define-public r-mbecs
(package
(name "r-mbecs")
(version "1.4.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MBECS" version))
(sha256
(base32 "0gfr3c5k7xjd342zfdksgh22mrk3ryr4cp89nar0mlpgzxg4l4vz"))))
(properties `((upstream-name . "MBECS")))
(build-system r-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'set-HOME
;; Fontconfig needs an writable cache
(lambda _ (setenv "HOME" "/tmp"))))))
(propagated-inputs
(list r-cluster
r-dplyr
r-ggplot2
r-gridextra
r-limma
r-lme4
r-lmertest
r-magrittr
r-markdown
r-matrix
r-pheatmap
r-phyloseq
r-rmarkdown
r-ruv
r-sva
r-tibble
r-tidyr
r-vegan))
(native-inputs (list r-knitr))
(home-page "https://github.com/rmolbrich/MBECS")
(synopsis
"Evaluation and correction of batch effects in microbiome data-sets")
(description
"The @acronym{MBECS, Microbiome Batch Effect Correction Suite} provides a
set of functions to evaluate and mitigate unwated noise due to processing in
batches. To that end it incorporates a host of batch correcting algorithms
(BECA) from various packages. In addition it offers a correction and reporting
pipeline that provides a preliminary look at the characteristics of a data-set
before and after correcting for batch effects.")
(license license:artistic2.0)))
(define-public r-mbkmeans
(package
(name "r-mbkmeans")