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@ -10118,6 +10118,57 @@ package comprehensively addressing issues ranging from post-alignments
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processing to visualization and annotation.")
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(license license:gpl2)))
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(define-public r-mbecs
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(package
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(name "r-mbecs")
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(version "1.4.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "MBECS" version))
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(sha256
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(base32 "0gfr3c5k7xjd342zfdksgh22mrk3ryr4cp89nar0mlpgzxg4l4vz"))))
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(properties `((upstream-name . "MBECS")))
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(build-system r-build-system)
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(arguments
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(list
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#:phases
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#~(modify-phases %standard-phases
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(add-after 'unpack 'set-HOME
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;; Fontconfig needs an writable cache
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(lambda _ (setenv "HOME" "/tmp"))))))
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(propagated-inputs
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(list r-cluster
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r-dplyr
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r-ggplot2
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r-gridextra
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r-limma
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r-lme4
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r-lmertest
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r-magrittr
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r-markdown
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r-matrix
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r-pheatmap
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r-phyloseq
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r-rmarkdown
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r-ruv
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r-sva
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r-tibble
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r-tidyr
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r-vegan))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/rmolbrich/MBECS")
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(synopsis
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"Evaluation and correction of batch effects in microbiome data-sets")
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(description
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"The @acronym{MBECS, Microbiome Batch Effect Correction Suite} provides a
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set of functions to evaluate and mitigate unwated noise due to processing in
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batches. To that end it incorporates a host of batch correcting algorithms
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(BECA) from various packages. In addition it offers a correction and reporting
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pipeline that provides a preliminary look at the characteristics of a data-set
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before and after correcting for batch effects.")
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(license license:artistic2.0)))
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(define-public r-mbkmeans
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(package
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(name "r-mbkmeans")
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