parent
13e2138c23
commit
10d3f8aa7b
|
@ -10118,6 +10118,57 @@ package comprehensively addressing issues ranging from post-alignments
|
||||||
processing to visualization and annotation.")
|
processing to visualization and annotation.")
|
||||||
(license license:gpl2)))
|
(license license:gpl2)))
|
||||||
|
|
||||||
|
(define-public r-mbecs
|
||||||
|
(package
|
||||||
|
(name "r-mbecs")
|
||||||
|
(version "1.4.0")
|
||||||
|
(source
|
||||||
|
(origin
|
||||||
|
(method url-fetch)
|
||||||
|
(uri (bioconductor-uri "MBECS" version))
|
||||||
|
(sha256
|
||||||
|
(base32 "0gfr3c5k7xjd342zfdksgh22mrk3ryr4cp89nar0mlpgzxg4l4vz"))))
|
||||||
|
(properties `((upstream-name . "MBECS")))
|
||||||
|
(build-system r-build-system)
|
||||||
|
(arguments
|
||||||
|
(list
|
||||||
|
#:phases
|
||||||
|
#~(modify-phases %standard-phases
|
||||||
|
(add-after 'unpack 'set-HOME
|
||||||
|
;; Fontconfig needs an writable cache
|
||||||
|
(lambda _ (setenv "HOME" "/tmp"))))))
|
||||||
|
(propagated-inputs
|
||||||
|
(list r-cluster
|
||||||
|
r-dplyr
|
||||||
|
r-ggplot2
|
||||||
|
r-gridextra
|
||||||
|
r-limma
|
||||||
|
r-lme4
|
||||||
|
r-lmertest
|
||||||
|
r-magrittr
|
||||||
|
r-markdown
|
||||||
|
r-matrix
|
||||||
|
r-pheatmap
|
||||||
|
r-phyloseq
|
||||||
|
r-rmarkdown
|
||||||
|
r-ruv
|
||||||
|
r-sva
|
||||||
|
r-tibble
|
||||||
|
r-tidyr
|
||||||
|
r-vegan))
|
||||||
|
(native-inputs (list r-knitr))
|
||||||
|
(home-page "https://github.com/rmolbrich/MBECS")
|
||||||
|
(synopsis
|
||||||
|
"Evaluation and correction of batch effects in microbiome data-sets")
|
||||||
|
(description
|
||||||
|
"The @acronym{MBECS, Microbiome Batch Effect Correction Suite} provides a
|
||||||
|
set of functions to evaluate and mitigate unwated noise due to processing in
|
||||||
|
batches. To that end it incorporates a host of batch correcting algorithms
|
||||||
|
(BECA) from various packages. In addition it offers a correction and reporting
|
||||||
|
pipeline that provides a preliminary look at the characteristics of a data-set
|
||||||
|
before and after correcting for batch effects.")
|
||||||
|
(license license:artistic2.0)))
|
||||||
|
|
||||||
(define-public r-mbkmeans
|
(define-public r-mbkmeans
|
||||||
(package
|
(package
|
||||||
(name "r-mbkmeans")
|
(name "r-mbkmeans")
|
||||||
|
|
Reference in New Issue