gnu: Add r-cellid.
* gnu/packages/bioconductor.scm (r-cellid): New variable.
parent
6398fa7860
commit
11651fbf7f
|
@ -1436,6 +1436,51 @@ curated cell type labels, for use in procedures like automated annotation of
|
||||||
single-cell data or deconvolution of bulk RNA-seq.")
|
single-cell data or deconvolution of bulk RNA-seq.")
|
||||||
(license license:gpl3)))
|
(license license:gpl3)))
|
||||||
|
|
||||||
|
(define-public r-cellid
|
||||||
|
(package
|
||||||
|
(name "r-cellid")
|
||||||
|
(version "1.8.1")
|
||||||
|
(source (origin
|
||||||
|
(method url-fetch)
|
||||||
|
(uri (bioconductor-uri "CelliD" version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"0vigvqjrlqbi5kviaj8qvyq3v8afgbc5pjrz7zmx2ckf4hdp0g03"))))
|
||||||
|
(properties `((upstream-name . "CelliD")))
|
||||||
|
(build-system r-build-system)
|
||||||
|
(propagated-inputs
|
||||||
|
(list r-data-table
|
||||||
|
r-biocparallel
|
||||||
|
r-fastmatch
|
||||||
|
r-fgsea
|
||||||
|
r-ggplot2
|
||||||
|
r-glue
|
||||||
|
r-irlba
|
||||||
|
r-matrix
|
||||||
|
r-matrixstats
|
||||||
|
r-pbapply
|
||||||
|
r-rcpp
|
||||||
|
r-rcpparmadillo
|
||||||
|
r-reticulate
|
||||||
|
r-rtsne
|
||||||
|
r-seurat
|
||||||
|
r-stringr
|
||||||
|
r-tictoc
|
||||||
|
r-singlecellexperiment
|
||||||
|
r-summarizedexperiment
|
||||||
|
r-umap))
|
||||||
|
(native-inputs (list r-knitr r-scater))
|
||||||
|
(home-page "https://bioconductor.org/packages/CelliD")
|
||||||
|
(synopsis
|
||||||
|
"Single cell gene signature extraction using multiple correspondence analysis")
|
||||||
|
(description
|
||||||
|
"CelliD is a clustering-free method for extracting per-cell gene
|
||||||
|
signatures from scRNA-seq. CelliD allows unbiased cell identity recognition
|
||||||
|
across different donors, tissues-of-origin, model organisms and single-cell
|
||||||
|
omics protocols. The package can also be used to explore functional pathways
|
||||||
|
enrichment in single cell data.")
|
||||||
|
(license license:gpl3)))
|
||||||
|
|
||||||
(define-public r-champdata
|
(define-public r-champdata
|
||||||
(package
|
(package
|
||||||
(name "r-champdata")
|
(name "r-champdata")
|
||||||
|
|
Reference in New Issue