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gnu: diamond: Update to 0.8.1. 

* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.1.
[source]: Remove 'snippet'.
[build-system]: Use cmake-build-system.
[arguments]: Remove modifications to phases.
[native-inputs]: Remove field.
[inputs]: Remove 'boost'.
master
Ben Woodcroft 2016-05-17 21:07:00 +10:00
parent a9e41d2faf
commit 122395f9fc
1 changed files with 5 additions and 26 deletions
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31
gnu/packages/bioinformatics.scm
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@ -1482,7 +1482,7 @@ identify enrichments with functional annotations of the genome.")
(define-public diamond
(package
(name "diamond")
(version "0.7.9")
(version "0.8.1")
(source (origin
(method url-fetch)
(uri (string-append
@ -1491,33 +1491,12 @@ identify enrichments with functional annotations of the genome.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0hfkcfv9f76h5brbyw9fyvmc0l9cmbsxrcdqk0fa9xv82zj47p15"))
(snippet '(begin
(delete-file "bin/diamond")
#t))))
(build-system gnu-build-system)
"1dqancz32c2l7w1b2vkvh5zqa2jnf99j1c41djnx1l8pxn044zdc"))))
(build-system cmake-build-system)
(arguments
'(#:tests? #f ;no "check" target
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'enter-source-dir
(lambda _
(chdir "src")
#t))
(delete 'configure)
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((bin (string-append (assoc-ref outputs "out")
"/bin")))
(mkdir-p bin)
(copy-file "../bin/diamond"
(string-append bin "/diamond"))
#t))))))
(native-inputs
`(("bc" ,bc)))
'(#:tests? #f)) ; no "check" target
(inputs
`(("boost" ,boost)
("zlib" ,zlib)))
`(("zlib" ,zlib)))
(home-page "https://github.com/bbuchfink/diamond")
(synopsis "Accelerated BLAST compatible local sequence aligner")
(description