gnu: Add python-parabam.
* gnu/packages/bioinformatics.scm (python-parabam): New variable. Change-Id: I66ccf5fd0647f908f1cefd38f0d92e589a81683bmaster
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@ -2110,6 +2110,29 @@ matplotlib Axes objects, making them easy to style and incorporate into
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multi-panel figures.")
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multi-panel figures.")
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(license license:expat)))
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(license license:expat)))
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(define-public python-parabam
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(package
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(name "python-parabam")
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(version "3.0.1")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "parabam" version))
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(sha256
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(base32 "1cy9q3gzdawi1kilycpd7waymjmrwsg8czwycfp13g301ir9xyp3"))
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(modules '((guix build utils)))
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(snippet
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'(substitute* "setup.py"
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(("'argparse',") "")))))
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(build-system pyproject-build-system)
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(propagated-inputs (list python-numpy python-pysam))
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(home-page "https://github.com/cancerit/parabam")
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(synopsis "Parallel BAM File Analysis")
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(description "Parabam is a tool for processing sequencing files in
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parallel. It uses Python's native multiprocessing framework to apply a user
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defined rule on an input file.")
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(license license:gpl3)))
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(define-public python-peaks2utr
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(define-public python-peaks2utr
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(package
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(package
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(name "python-peaks2utr")
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(name "python-peaks2utr")
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