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gnu: Add python-parabam.

* gnu/packages/bioinformatics.scm (python-parabam): New variable.

Change-Id: I66ccf5fd0647f908f1cefd38f0d92e589a81683b
master
Ricardo Wurmus 2024-01-06 14:53:42 +01:00
parent 5c0f77f424
commit 16a277e0a9
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1 changed files with 23 additions and 0 deletions

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@ -2110,6 +2110,29 @@ matplotlib Axes objects, making them easy to style and incorporate into
multi-panel figures.")
(license license:expat)))
(define-public python-parabam
(package
(name "python-parabam")
(version "3.0.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "parabam" version))
(sha256
(base32 "1cy9q3gzdawi1kilycpd7waymjmrwsg8czwycfp13g301ir9xyp3"))
(modules '((guix build utils)))
(snippet
'(substitute* "setup.py"
(("'argparse',") "")))))
(build-system pyproject-build-system)
(propagated-inputs (list python-numpy python-pysam))
(home-page "https://github.com/cancerit/parabam")
(synopsis "Parallel BAM File Analysis")
(description "Parabam is a tool for processing sequencing files in
parallel. It uses Python's native multiprocessing framework to apply a user
defined rule on an input file.")
(license license:gpl3)))
(define-public python-peaks2utr
(package
(name "python-peaks2utr")