gnu: r-nmf: Move from "annotation" to "package" section.
* gnu/packages/bioconductor.scm (r-nmf): Move variable.master
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@ -748,51 +748,6 @@ annotations.")
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"This is a manifest package for Illumina's EPIC methylation arrays.")
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"This is a manifest package for Illumina's EPIC methylation arrays.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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;; This is a CRAN package, but it depends on Bioconductor packages.
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(define-public r-nmf
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(package
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(name "r-nmf")
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(version "0.23.0")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "NMF" version))
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(sha256
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(base32
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"0ls7q9yc9l1z10jphq5a11wkfgcxc3gm3sfjj376zx3vnc0wl30g"))))
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(properties `((upstream-name . "NMF")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-cluster" ,r-cluster)
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("r-biobase" ,r-biobase)
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("r-biocmanager" ,r-biocmanager)
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("r-bigmemory" ,r-bigmemory) ; suggested
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("r-synchronicity" ,r-synchronicity) ; suggested
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("r-colorspace" ,r-colorspace)
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("r-digest" ,r-digest)
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("r-doparallel" ,r-doparallel)
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("r-foreach" ,r-foreach)
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("r-ggplot2" ,r-ggplot2)
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("r-gridbase" ,r-gridbase)
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("r-pkgmaker" ,r-pkgmaker)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-registry" ,r-registry)
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("r-reshape2" ,r-reshape2)
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("r-rngtools" ,r-rngtools)
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("r-stringr" ,r-stringr)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "http://renozao.github.io/NMF")
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(synopsis "Algorithms and framework for nonnegative matrix factorization")
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(description
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"This package provides a framework to perform Non-negative Matrix
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Factorization (NMF). The package implements a set of already published
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algorithms and seeding methods, and provides a framework to test, develop and
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plug new or custom algorithms. Most of the built-in algorithms have been
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optimized in C++, and the main interface function provides an easy way of
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performing parallel computations on multicore machines.")
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(license license:gpl2+)))
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(define-public r-do-db
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(define-public r-do-db
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(package
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(package
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(name "r-do-db")
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(name "r-do-db")
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@ -1289,6 +1244,51 @@ the weighted combination of published signatures that, when summed, most
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closely reconstructs the mutational profile.")
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closely reconstructs the mutational profile.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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;; This is a CRAN package, but it depends on Bioconductor packages.
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(define-public r-nmf
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(package
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(name "r-nmf")
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(version "0.23.0")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "NMF" version))
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(sha256
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(base32
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"0ls7q9yc9l1z10jphq5a11wkfgcxc3gm3sfjj376zx3vnc0wl30g"))))
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(properties `((upstream-name . "NMF")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-cluster" ,r-cluster)
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("r-biobase" ,r-biobase)
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("r-biocmanager" ,r-biocmanager)
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("r-bigmemory" ,r-bigmemory) ; suggested
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("r-synchronicity" ,r-synchronicity) ; suggested
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("r-colorspace" ,r-colorspace)
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("r-digest" ,r-digest)
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("r-doparallel" ,r-doparallel)
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("r-foreach" ,r-foreach)
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("r-ggplot2" ,r-ggplot2)
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("r-gridbase" ,r-gridbase)
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("r-pkgmaker" ,r-pkgmaker)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-registry" ,r-registry)
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("r-reshape2" ,r-reshape2)
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("r-rngtools" ,r-rngtools)
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("r-stringr" ,r-stringr)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "http://renozao.github.io/NMF")
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(synopsis "Algorithms and framework for nonnegative matrix factorization")
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(description
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"This package provides a framework to perform Non-negative Matrix
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Factorization (NMF). The package implements a set of already published
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algorithms and seeding methods, and provides a framework to test, develop and
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plug new or custom algorithms. Most of the built-in algorithms have been
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optimized in C++, and the main interface function provides an easy way of
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performing parallel computations on multicore machines.")
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(license license:gpl2+)))
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(define-public r-affycomp
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(define-public r-affycomp
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(package
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(package
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(name "r-affycomp")
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(name "r-affycomp")
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