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@ -10969,6 +10969,46 @@ contigs alone.")
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(license (list license:gpl2+ ; bundled ogdf
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(license (list license:gpl2+ ; bundled ogdf
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license:gpl3+))))
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license:gpl3+))))
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(define-public libmaus2
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(package
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(name "libmaus2")
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(version "2.0.786")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://gitlab.com/german.tischler/libmaus2")
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(commit (string-append version "-release-20210531143054"))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1rxakmwjcx2yq5sjh3v849f7dfw4xzc2fyzf6s28s3p95z84w564"))))
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(build-system gnu-build-system)
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;; The test suite attempts to execute ../test-driver, which does not exist.
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(arguments '(#:tests? #false))
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(propagated-inputs
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`(("zlib" ,zlib)))
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(native-inputs
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`(("gcc" ,gcc-10) ;Code has C++17 requirements
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("pkg-config" ,pkg-config)))
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(home-page "https://gitlab.com/german.tischler/libmaus2")
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(synopsis "Collection of data structures and algorithms useful for bioinformatics")
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(description "libmaus2 is a collection of data structures and
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algorithms. It contains:
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@itemize
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@item I/O classes (single byte and UTF-8);
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@item @code{bitio} classes (input, output and various forms of bit level
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manipulation);
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@item text indexing classes (suffix and LCP array, fulltext and minute (FM),
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etc.);
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@item BAM sequence alignment files input/output (simple and collating);
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and many lower level support classes.
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@end itemize\n")
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;; The code is explicitly available under the terms of either GPLv2 or
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;; GPLv3 according to the AUTHORS file, though most files have a GPLv3+
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;; license header.
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(license (list license:gpl2+ license:gpl3+))))
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(define-public r-circus
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(define-public r-circus
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(package
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(package
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(name "r-circus")
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(name "r-circus")
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