me
/
guix
Archived
1
0
Fork 0
Code

gnu: python-cooler: Skip broken test. 

* gnu/packages/bioinformatics.scm (python-cooler)[arguments]: Add another
patch for tests/test_util.py.
master
Ricardo Wurmus 2022-09-21 22:16:56 +02:00
parent cd5bbb9b42
commit 1a1ff7ed8f
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 7 additions and 4 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

11
gnu/packages/bioinformatics.scm
View File

@ -12750,10 +12750,13 @@ fasta subsequences.")
"access to genome.ucsc.edu\")\n" "access to genome.ucsc.edu\")\n"
"def test_roundtrip"))) "def test_roundtrip")))
(substitute* "tests/test_util.py" (substitute* "tests/test_util.py"
(("def test_fetch_chromsizes") (("def test_fetch_chromsizes")
(string-append "@pytest.mark.skip(reason=\"requires network " (string-append "@pytest.mark.skip(reason=\"requires network "
"access to genome.ucsc.edu\")\n" "access to genome.ucsc.edu\")\n"
"def test_fetch_chromsizes"))) "def test_fetch_chromsizes"))
;; See https://github.com/open2c/cooler/issues/287
(("skipif\\(six.PY2, reason=\"Scipy on Py2 is too old\"")
"skip(reason=\"Scipy is too new\""))
;; This test depends on ipytree, which contains a lot of minified ;; This test depends on ipytree, which contains a lot of minified
;; JavaScript. ;; JavaScript.
(substitute* "tests/test_fileops.py" (substitute* "tests/test_fileops.py"