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gnu: r-rhdf5lib: Update to 1.14.0.

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* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.0.
[source]: Update deletions.
[arguments]: Update substitutions.
[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
This commit is contained in:
Ricardo Wurmus 2021-06-05 01:44:46 +02:00
parent 53ec97713a
commit 1b0338d76b
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GPG key ID: 197A5888235FACAC
1 changed files with 9 additions and 10 deletions
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19
gnu/packages/bioconductor.scm
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@ -12253,22 +12253,21 @@ block processing.")
(define-public r-rhdf5lib (define-public r-rhdf5lib
(package (package
(name "r-rhdf5lib") (name "r-rhdf5lib")
(version "1.12.1") (version "1.14.0")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (bioconductor-uri "Rhdf5lib" version)) (uri (bioconductor-uri "Rhdf5lib" version))
(sha256 (sha256
(base32 (base32
"14fnq4gijxp2l7985pksfk52i6klvy81r3892lnna73c6hh1dj28")) "1ypqmd4nz4hxlb2qsay7f5784dqdjhc3b19pckzkhb65bfycdn87"))
(modules '((guix build utils))) (modules '((guix build utils)))
(snippet (snippet
'(begin '(begin
;; Delete bundled binaries ;; Delete bundled binaries
(delete-file-recursively "src/wininclude/") (delete-file-recursively "src/wininclude/")
(delete-file-recursively "src/winlib-4.9.3/")
(delete-file-recursively "src/winlib-8.3.0/") (delete-file-recursively "src/winlib-8.3.0/")
(delete-file "src/hdf5small_cxx_hl_1.10.6.tar.gz") (delete-file "src/hdf5small_cxx_hl_1.10.7.tar.gz")
#t)))) #t))))
(properties `((upstream-name . "Rhdf5lib"))) (properties `((upstream-name . "Rhdf5lib")))
(build-system r-build-system) (build-system r-build-system)
@ -12280,7 +12279,9 @@ block processing.")
(for-each delete-file '("configure" "configure.ac")) (for-each delete-file '("configure" "configure.ac"))
;; Do not make other packages link with the proprietary libsz. ;; Do not make other packages link with the proprietary libsz.
(substitute* "R/zzz.R" (substitute* "R/zzz.R"
((" \"%s/libsz.a\"") "")) ((" \"%s/libsz.a\"") "")
(("patharch, .getDynamicLinks")
".getDynamicLinks"))
(with-directory-excursion "src" (with-directory-excursion "src"
(invoke "tar" "xvf" (assoc-ref inputs "hdf5-source")) (invoke "tar" "xvf" (assoc-ref inputs "hdf5-source"))
(rename-file (string-append "hdf5-" ,(package-version hdf5-1.10)) (rename-file (string-append "hdf5-" ,(package-version hdf5-1.10))
@ -12319,12 +12320,10 @@ block processing.")
(assoc-ref inputs "hdf5") "/lib/libhdf5_hl_cpp.a\n")) (assoc-ref inputs "hdf5") "/lib/libhdf5_hl_cpp.a\n"))
;; szip is non-free software ;; szip is non-free software
(("cp \"\\$\\{SZIP_LIB\\}.*") "") (("cp \"\\$\\{SZIP_LIB\\}.*") "")
(("PKG_LIBS =.*") "PKG_LIBS = -lz -lhdf5\n"))) (("PKG_LIBS =.*") "PKG_LIBS = -lz -lhdf5\n"))))))))
#t)))))
(inputs
`(("zlib" ,zlib)))
(propagated-inputs (propagated-inputs
`(("hdf5" ,hdf5-1.10))) `(("hdf5" ,hdf5-1.10)
("zlib" ,zlib)))
(native-inputs (native-inputs
`(("hdf5-source" ,(package-source hdf5-1.10)) `(("hdf5-source" ,(package-source hdf5-1.10))
("r-knitr" ,r-knitr))) ("r-knitr" ,r-knitr)))