gnu: Add libBigWig.
* gnu/packages/bioinformatics.scm (libbigwig): New variable.
This commit is contained in:
		
							parent
							
								
									1644f0cd87
								
							
						
					
					
						commit
						1baee943ca
					
				
					 1 changed files with 47 additions and 0 deletions
				
			
		|  | @ -40,6 +40,7 @@ | ||||||
|   #:use-module (gnu packages boost) |   #:use-module (gnu packages boost) | ||||||
|   #:use-module (gnu packages compression) |   #:use-module (gnu packages compression) | ||||||
|   #:use-module (gnu packages cpio) |   #:use-module (gnu packages cpio) | ||||||
|  |   #:use-module (gnu packages curl) | ||||||
|   #:use-module (gnu packages file) |   #:use-module (gnu packages file) | ||||||
|   #:use-module (gnu packages gawk) |   #:use-module (gnu packages gawk) | ||||||
|   #:use-module (gnu packages gcc) |   #:use-module (gnu packages gcc) | ||||||
|  | @ -1081,6 +1082,52 @@ preparation protocols.") | ||||||
| other types of unwanted sequence from high-throughput sequencing reads.") | other types of unwanted sequence from high-throughput sequencing reads.") | ||||||
|     (license license:expat))) |     (license license:expat))) | ||||||
| 
 | 
 | ||||||
|  | (define-public libbigwig | ||||||
|  |   (package | ||||||
|  |     (name "libbigwig") | ||||||
|  |     (version "0.1.4") | ||||||
|  |     (source (origin | ||||||
|  |               (method url-fetch) | ||||||
|  |               (uri (string-append "https://github.com/dpryan79/libBigWig/" | ||||||
|  |                                   "archive/" version ".tar.gz")) | ||||||
|  |               (file-name (string-append name "-" version ".tar.gz")) | ||||||
|  |               (sha256 | ||||||
|  |                (base32 | ||||||
|  |                 "098rjh35pi4a9q83n8wiwvyzykjqj6l8q189p1xgfw4ghywdlvw1")))) | ||||||
|  |     (build-system gnu-build-system) | ||||||
|  |     (arguments | ||||||
|  |      `(#:test-target "test" | ||||||
|  |        #:make-flags | ||||||
|  |        (list "CC=gcc" | ||||||
|  |              (string-append "prefix=" (assoc-ref %outputs "out"))) | ||||||
|  |        #:phases | ||||||
|  |        (modify-phases %standard-phases | ||||||
|  |          (delete 'configure) | ||||||
|  |          (add-before 'check 'disable-curl-test | ||||||
|  |            (lambda _ | ||||||
|  |              (substitute* "Makefile" | ||||||
|  |                (("./test/testRemote.*") "")) | ||||||
|  |              #t)) | ||||||
|  |          ;; This has been fixed with the upstream commit 4ff6959cd8a0, but | ||||||
|  |          ;; there has not yet been a release containing this change. | ||||||
|  |          (add-before 'install 'create-target-dirs | ||||||
|  |            (lambda* (#:key outputs #:allow-other-keys) | ||||||
|  |              (let ((out (assoc-ref outputs "out"))) | ||||||
|  |                (mkdir-p (string-append out "/lib")) | ||||||
|  |                (mkdir-p (string-append out "/include")) | ||||||
|  |                #t)))))) | ||||||
|  |     (inputs | ||||||
|  |      `(("zlib" ,zlib) | ||||||
|  |        ("curl" ,curl))) | ||||||
|  |     (native-inputs | ||||||
|  |      `(("doxygen" ,doxygen))) | ||||||
|  |     (home-page "https://github.com/dpryan79/libBigWig") | ||||||
|  |     (synopsis "C library for handling bigWig files") | ||||||
|  |     (description | ||||||
|  |      "This package provides a C library for parsing local and remote BigWig | ||||||
|  | files.") | ||||||
|  |     (license license:expat))) | ||||||
|  | 
 | ||||||
| (define-public deeptools | (define-public deeptools | ||||||
|   (package |   (package | ||||||
|     (name "deeptools") |     (name "deeptools") | ||||||
|  |  | ||||||
		Reference in a new issue