gnu: Add libBigWig.
* gnu/packages/bioinformatics.scm (libbigwig): New variable.master
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@ -40,6 +40,7 @@
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#:use-module (gnu packages boost)
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#:use-module (gnu packages boost)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages cpio)
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#:use-module (gnu packages cpio)
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#:use-module (gnu packages curl)
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#:use-module (gnu packages file)
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#:use-module (gnu packages file)
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#:use-module (gnu packages gawk)
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#:use-module (gnu packages gawk)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages gcc)
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@ -1081,6 +1082,52 @@ preparation protocols.")
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other types of unwanted sequence from high-throughput sequencing reads.")
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other types of unwanted sequence from high-throughput sequencing reads.")
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(license license:expat)))
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(license license:expat)))
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(define-public libbigwig
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(package
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(name "libbigwig")
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(version "0.1.4")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://github.com/dpryan79/libBigWig/"
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"archive/" version ".tar.gz"))
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(file-name (string-append name "-" version ".tar.gz"))
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(sha256
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(base32
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"098rjh35pi4a9q83n8wiwvyzykjqj6l8q189p1xgfw4ghywdlvw1"))))
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(build-system gnu-build-system)
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(arguments
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`(#:test-target "test"
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#:make-flags
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(list "CC=gcc"
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(string-append "prefix=" (assoc-ref %outputs "out")))
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#:phases
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(modify-phases %standard-phases
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(delete 'configure)
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(add-before 'check 'disable-curl-test
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(lambda _
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(substitute* "Makefile"
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(("./test/testRemote.*") ""))
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#t))
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;; This has been fixed with the upstream commit 4ff6959cd8a0, but
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;; there has not yet been a release containing this change.
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(add-before 'install 'create-target-dirs
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((out (assoc-ref outputs "out")))
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(mkdir-p (string-append out "/lib"))
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(mkdir-p (string-append out "/include"))
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#t))))))
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(inputs
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`(("zlib" ,zlib)
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("curl" ,curl)))
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(native-inputs
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`(("doxygen" ,doxygen)))
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(home-page "https://github.com/dpryan79/libBigWig")
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(synopsis "C library for handling bigWig files")
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(description
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"This package provides a C library for parsing local and remote BigWig
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files.")
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(license license:expat)))
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(define-public deeptools
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(define-public deeptools
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(package
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(package
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(name "deeptools")
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(name "deeptools")
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