gnu: velvet: Improve package style.
* gnu/packages/bioinformatics.scm (velvet)[arguments]: Use G-expressions. [native-inputs]: Remove label.
parent
42500f1aad
commit
1e92db8927
|
@ -17066,20 +17066,20 @@ to an artifact/contaminant file.")
|
|||
(delete-file-recursively "third-party")))))
|
||||
(build-system gnu-build-system)
|
||||
(arguments
|
||||
`(#:make-flags '("OPENMP=t")
|
||||
(list
|
||||
#:make-flags #~(list "OPENMP=t")
|
||||
#:test-target "test"
|
||||
#:phases
|
||||
(modify-phases %standard-phases
|
||||
#~(modify-phases %standard-phases
|
||||
(delete 'configure)
|
||||
(add-after 'unpack 'fix-zlib-include
|
||||
(lambda _
|
||||
(substitute* "src/binarySequences.c"
|
||||
(("../third-party/zlib-1.2.3/zlib.h") "zlib.h"))))
|
||||
(replace 'install
|
||||
(lambda* (#:key outputs #:allow-other-keys)
|
||||
(let* ((out (assoc-ref outputs "out"))
|
||||
(bin (string-append out "/bin"))
|
||||
(doc (string-append out "/share/doc/velvet")))
|
||||
(lambda _
|
||||
(let ((bin (string-append #$output "/bin"))
|
||||
(doc (string-append #$output "/share/doc/velvet")))
|
||||
(mkdir-p bin)
|
||||
(mkdir-p doc)
|
||||
(install-file "velveth" bin)
|
||||
|
@ -17089,14 +17089,14 @@ to an artifact/contaminant file.")
|
|||
(inputs
|
||||
(list openmpi zlib))
|
||||
(native-inputs
|
||||
`(("texlive" ,(texlive-updmap.cfg
|
||||
(list (texlive-updmap.cfg
|
||||
(list texlive-ec
|
||||
texlive-graphics
|
||||
texlive-grfext
|
||||
texlive-hyperref
|
||||
texlive-infwarerr
|
||||
texlive-kvoptions
|
||||
texlive-pdftexcmds)))))
|
||||
texlive-pdftexcmds))))
|
||||
(home-page "https://www.ebi.ac.uk/~zerbino/velvet/")
|
||||
(synopsis "Nucleic acid sequence assembler for very short reads")
|
||||
(description
|
||||
|
|
Reference in New Issue