gnu: gap: Update to 4.12.2.
* gnu/packages/algebra.scm (gap): Update to 4.12.2. [snippet]: Delete only bundled libraries inside hpcgap instead of the complete subdirectory. Update package names and add new packages. [arguments]: Use "make install" and a phase to install packages.
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					 1 changed files with 62 additions and 72 deletions
				
			
		|  | @ -1257,7 +1257,7 @@ xtensor provides: | |||
| (define-public gap | ||||
|   (package | ||||
|     (name "gap") | ||||
|     (version "4.11.1") | ||||
|     (version "4.12.2") | ||||
|     (source | ||||
|      (origin | ||||
|        (method url-fetch) | ||||
|  | @ -1267,14 +1267,13 @@ xtensor provides: | |||
|                            version | ||||
|                            ".tar.gz")) | ||||
|        (sha256 | ||||
|         (base32 "01535s81h254zcs84zi95xqmhvvn6fn9qss8761myxc2gpdcadb6")) | ||||
|         (base32 "1a47slldnjq6mib69k3g8lqw6nyxdrwdd3gfjhj252mpbrs0h8v7")) | ||||
|        (modules '((guix build utils) (ice-9 ftw) (srfi srfi-1))) | ||||
|        (snippet | ||||
|         '(begin | ||||
|            ;; Delete the external gmp and zlib libraries | ||||
|            ;; and a subdirectory not needed for our build. | ||||
|            ;; Delete bundled external libraries. | ||||
|            (for-each delete-file-recursively | ||||
|                      '("extern" "hpcgap")) | ||||
|                      '("extern" "hpcgap/extern")) | ||||
|            ;; Delete a failing test. | ||||
|            ;; FIXME: This might be fixed in the next release, see | ||||
|            ;; https://github.com/gap-system/gap/issues/3292 | ||||
|  | @ -1288,47 +1287,69 @@ xtensor provides: | |||
|                  (scandir ".") | ||||
|                  '("." ".." | ||||
|                    ;; Necessary packages. | ||||
|                    "GAPDoc-" | ||||
|                    "primgrp-" | ||||
|                    "SmallGrp-"   ; artistic2.0 | ||||
|                    "transgrp"    ; artistic2.0 for data, | ||||
|                                  ; gpl2 or gpl3 for code | ||||
|                    "gapdoc" | ||||
|                    "primgrp" | ||||
|                    "smallgrp"   ; artistic2.0 | ||||
|                    "transgrp"   ; artistic2.0 for data, | ||||
|                                 ; gpl2 or gpl3 for code | ||||
|                    ;; Optional packages. | ||||
|                    "alnuth-" | ||||
|                    "AutoDoc-" | ||||
|                    "automata-" | ||||
|                    "autpgrp-" | ||||
|                    "crime-" | ||||
|                    "crisp-"      ; bsd-2 | ||||
|                    "ctbllib"     ; gpl3+ | ||||
|                    "4ti2interface" | ||||
|                    "alnuth" | ||||
|                    "autodoc" | ||||
|                    "automata" | ||||
|                    "autpgrp" | ||||
|                    "cap" | ||||
|                    "crime" | ||||
|                    "crisp"      ; bsd-2 | ||||
|                    "ctbllib"    ; gpl3+ | ||||
|                    "datastructures" | ||||
|                    "FactInt-" | ||||
|                    "examplesforhomalg" | ||||
|                    "factint" | ||||
|                    "fga" | ||||
|                    "format" | ||||
|                    "groupoids-" | ||||
|                    "gauss" | ||||
|                    "gaussforhomalg" | ||||
|                    "generalizedmorphismsforcap" | ||||
|                    "gradedmodules" | ||||
|                    "gradedringforhomalg" | ||||
|                    "groupoids" | ||||
|                    "guarana" | ||||
|                    "idrel-" | ||||
|                    "images-"     ; mpl2.0 | ||||
|                    "IntPic-" | ||||
|                    "io-"         ; gpl3+ | ||||
|                    "irredsol-"   ; bsd-2 | ||||
|                    "laguna-" | ||||
|                    "liering-" | ||||
|                    "MapClass-" | ||||
|                    "nilmat-" | ||||
|                    "NumericalSgps-" | ||||
|                    "OpenMath-" | ||||
|                    "orb-"        ; gpl3+ | ||||
|                    "polenta-" | ||||
|                    "polycyclic-" | ||||
|                    "radiroot-" | ||||
|                    "repsn-" | ||||
|                    "resclasses-" | ||||
|                    "homalg" | ||||
|                    "homalgtocas" | ||||
|                    "idrel" | ||||
|                    "images"     ; mpl2.0 | ||||
|                    "intpic" | ||||
|                    "io"         ; gpl3+ | ||||
|                    "ioforhomalg" | ||||
|                    "irredsol"   ; bsd-2 | ||||
|                    "laguna" | ||||
|                    "liering" | ||||
|                    "linearalgebraforcap" | ||||
|                    "localizeringforhomalg" | ||||
|                    "mapclass" | ||||
|                    "matricesforhomalg" | ||||
|                    "modulepresentationsforcap" | ||||
|                    "modules" | ||||
|                    "monoidalcategories" | ||||
|                    "nconvex" | ||||
|                    "nilmat" | ||||
|                    "numericalsgps" | ||||
|                    "openmath" | ||||
|                    "orb"        ; gpl3+ | ||||
|                    "polenta" | ||||
|                    "polycyclic" | ||||
|                    "radiroot" | ||||
|                    "recog"      ; gpl3+ | ||||
|                    "repsn" | ||||
|                    "resclasses" | ||||
|                    "ringsforhomalg" | ||||
|                    "sco" | ||||
|                    "simpcomp" | ||||
|                    "sophus-" | ||||
|                    "tomlib-" | ||||
|                    "unipot-" | ||||
|                    "utils-")))))))) | ||||
|                    "sophus" | ||||
|                    "tomlib" | ||||
|                    "toolsforhomalg" | ||||
|                    "unipot" | ||||
|                    "utils")))))))) | ||||
|     (build-system gnu-build-system) | ||||
|     (inputs | ||||
|      (list gmp readline zlib)) | ||||
|  | @ -1351,41 +1372,10 @@ xtensor provides: | |||
|            (lambda _ | ||||
|              (with-directory-excursion "doc" | ||||
|                (invoke "./make_doc")))) | ||||
|          (replace 'install | ||||
|          (add-after 'install 'install-packages | ||||
|            (lambda* (#:key outputs #:allow-other-keys) | ||||
|              (let* ((out (assoc-ref outputs "out")) | ||||
|                     (bin (string-append out "/bin")) | ||||
|                     (prog (string-append bin "/gap")) | ||||
|                     (prog-real (string-append bin "/.gap-real")) | ||||
|                     (share (string-append out "/share/gap"))) | ||||
|                ;; Install only the gap binary; the gac compiler is left | ||||
|                ;; for maybe later. "Wrap" it in a shell script that calls | ||||
|                ;; the binary with the correct parameter. | ||||
|                ;; The make target install-bin is supposed to do that, but | ||||
|                ;; is not currently working. | ||||
|                (mkdir-p bin) | ||||
|                (copy-file "gap" prog-real) | ||||
|                (call-with-output-file prog | ||||
|                  (lambda (port) | ||||
|                    (format port | ||||
|                            "#!~a~%exec ~a -l ~a \"$@\"~%" | ||||
|                            (which "bash") | ||||
|                            prog-real | ||||
|                            share))) | ||||
|                (chmod prog #o755) | ||||
|                ;; Install the headers and library, which are needed by Sage. | ||||
|                (invoke "make" "install-headers") | ||||
|                (install-file "gen/config.h" | ||||
|                              (string-append out "/include/gap")) | ||||
|                (invoke "make" "install-libgap") | ||||
|                ;; Remove information on the build directory from sysinfo.gap. | ||||
|                (substitute* "sysinfo.gap" | ||||
|                  (("GAP_BIN_DIR=\".*\"") "GAP_BIN_DIR=\"\"") | ||||
|                  (("GAP_LIB_DIR=\".*\"") "GAP_LIB_DIR=\"\"") | ||||
|                  (("GAP_CPPFLAGS=\".*\"") "GAP_CPPFLAGS=\"\"")) | ||||
|                (invoke "make" "install-gaproot") | ||||
|                ;; Copy the directory of compiled packages; the make target | ||||
|                ;; install-pkg is currently empty. | ||||
|                (copy-recursively "pkg" (string-append share "/pkg")))))))) | ||||
|     (home-page "https://www.gap-system.org/") | ||||
|     (synopsis | ||||
|  |  | |||
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