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gnu: Add r-loomr.

* gnu/packages/bioinformatics.scm (r-loomr): New variable.
master
Roel Janssen 2020-09-09 16:56:02 +02:00
parent 37d3373008
commit 1f56ec08af
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@ -7808,6 +7808,32 @@ and the assessment of differential expression. The analysis methods apply to
different technologies, including microarrays, RNA-seq, and quantitative PCR.")
(license license:gpl2+)))
(define-public r-loomr
(package
(name "r-loomr")
(version "0.2.0-beta")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/mojaveazure/loomR/archive/"
version ".tar.gz"))
(sha256
(base32
"1grchjgiky5siifkl9hmj6v0sf7q2by62rfdj2k8s2zhmrpgb0yw"))))
(build-system r-build-system)
(propagated-inputs
`(("r-hdf5r" ,r-hdf5r)
("r-r6" ,r-r6)
("r-iterators" ,r-iterators)
("r-itertools" ,r-itertools)
("r-matrix" ,r-matrix)))
(home-page "http://loompy.org")
(synopsis "R interface for loom files")
(description "This package provides an interface for the single-cell
RNAseq-oriented loom format. Loom files are an HDF5-based format for storing
and interacting with large single-cell RNAseq datasets.")
(license license:gpl3)))
(define-public r-xvector
(package
(name "r-xvector")