From 1f94ba94082f706eac5e19d56ef6d72f54239743 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 5 Jun 2018 11:26:08 +0200
Subject: [PATCH] gnu: java-picard: Delete failing build phase.

* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Delete
"generate-jar-indices" phase.
---
 gnu/packages/bioinformatics.scm | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index dd7077ac9a..57150aefb2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3154,6 +3154,8 @@ manipulating HTS data.")
        #:jdk ,icedtea-8
        #:phases
        (modify-phases %standard-phases
+         ;; FIXME: this phase fails with "duplicate entry: htsjdk/samtools/AbstractBAMFileIndex$1.class"
+         (delete 'generate-jar-indices)
          (add-after 'unpack 'use-our-htsjdk
            (lambda* (#:key inputs #:allow-other-keys)
              (substitute* "build.xml"