gnu: Add r-conos.
* gnu/packages/bioconductor.scm (r-conos): New variable.
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@ -5581,6 +5581,57 @@ provides a highly flexible way to arrange multiple heatmaps and supports
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self-defined annotation graphics.")
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self-defined annotation graphics.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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;; This is a CRAN package, but it depends on r-complexheatmap from
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;; Bioconductor.
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(define-public r-conos
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(package
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(name "r-conos")
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(version "1.5.0")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "conos" version))
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(sha256
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(base32 "1wdhb3jxh4id6xaghawzip8s264g9jxp4i5xy7jfhi67yfxszx6w"))))
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(properties `((upstream-name . "conos")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-abind
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r-complexheatmap
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r-cowplot
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r-dendextend
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r-dplyr
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r-ggplot2
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r-ggrepel
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r-gridextra
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r-igraph
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r-irlba
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r-leidenalg
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r-magrittr
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r-matrix
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r-n2r
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r-r6
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r-rcpp
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r-rcpparmadillo
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r-rcppeigen
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r-rcppprogress
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r-reshape2
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r-rlang
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r-rtsne
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r-sccore))
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(home-page "https://github.com/kharchenkolab/conos")
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(synopsis "Clustering on network of samples")
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(description
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"This package wires together large collections of single-cell RNA-seq
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datasets, which allows for both the identification of recurrent cell clusters
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and the propagation of information between datasets in multi-sample or
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atlas-scale collections. Conos focuses on the uniform mapping of homologous
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cell types across heterogeneous sample collections. For instance, users could
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investigate a collection of dozens of peripheral blood samples from cancer
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patients combined with dozens of controls, which perhaps includes samples of a
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related tissue such as lymph nodes.")
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(license license:gpl3)))
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(define-public r-copywriter
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(define-public r-copywriter
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(package
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(package
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(name "r-copywriter")
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(name "r-copywriter")
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