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gnu: Add r-premessa.

* gnu/packages/bioinformatics.scm (r-premessa): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
This commit is contained in:
Navid Afkhami 2023-03-14 15:01:29 +00:00 committed by Ricardo Wurmus
parent 4ebc36206b
commit 204c51cac4
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GPG key ID: 197A5888235FACAC

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@ -8940,6 +8940,62 @@ target genes, Pando simultaneously infers gene modules and sets of regulatory
regions for each transcription factor.")
(license license:expat)))
(define-public r-premessa
(let ((commit "68b42bb984637d0f3ad6a0ecc83e9278994afc85")
(revision "1"))
(package
(name "r-premessa")
(version (git-version "0.3.4" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/ParkerICI/premessa")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"1l0q431zk0lvg22130nx84gdqi7cpl05yah4am63lbx6m4c769pb"))
(snippet
'(delete-file "inst/normalizer_shinyGUI/www/d3.min.js"))))
(properties `((upstream-name . "premessa")))
(build-system r-build-system)
(arguments
(list
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'process-javascript
(lambda* (#:key inputs #:allow-other-keys)
(with-directory-excursion "inst/normalizer_shinyGUI/www/"
(invoke "esbuild" (assoc-ref inputs "d3.v4.js")
"--minify" "--outfile=d3.min.js")))))))
(propagated-inputs
(list r-data-table
r-flowcore
r-ggplot2
r-gridextra
r-hexbin
r-jsonlite
r-reshape
r-rhandsontable
r-shiny
r-shinyjqui))
(native-inputs
`(("esbuild" ,esbuild)
("d3.v4.js"
,(origin
(method url-fetch)
(uri "https://d3js.org/d3.v4.js")
(sha256
(base32
"0y7byf6kcinfz9ac59jxc4v6kppdazmnyqfav0dm4h550fzfqqlg"))))))
(home-page "https://github.com/ParkerICI/premessa")
(synopsis "Pre-processing of flow and mass cytometry data")
(description
"This is an R package for pre-processing of flow and mass cytometry
data. This package includes panel editing or renaming for FCS files,
bead-based normalization and debarcoding.")
(license license:gpl3))))
(define-public r-presto
(let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
(revision "0"))