gnu: Add r-premessa.
* gnu/packages/bioinformatics.scm (r-premessa): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
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@ -8940,6 +8940,62 @@ target genes, Pando simultaneously infers gene modules and sets of regulatory
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regions for each transcription factor.")
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(license license:expat)))
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(define-public r-premessa
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(let ((commit "68b42bb984637d0f3ad6a0ecc83e9278994afc85")
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(revision "1"))
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(package
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(name "r-premessa")
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(version (git-version "0.3.4" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/ParkerICI/premessa")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1l0q431zk0lvg22130nx84gdqi7cpl05yah4am63lbx6m4c769pb"))
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(snippet
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'(delete-file "inst/normalizer_shinyGUI/www/d3.min.js"))))
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(properties `((upstream-name . "premessa")))
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(build-system r-build-system)
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(arguments
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(list
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#:phases
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'(modify-phases %standard-phases
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(add-after 'unpack 'process-javascript
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(lambda* (#:key inputs #:allow-other-keys)
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(with-directory-excursion "inst/normalizer_shinyGUI/www/"
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(invoke "esbuild" (assoc-ref inputs "d3.v4.js")
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"--minify" "--outfile=d3.min.js")))))))
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(propagated-inputs
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(list r-data-table
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r-flowcore
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r-ggplot2
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r-gridextra
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r-hexbin
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r-jsonlite
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r-reshape
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r-rhandsontable
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r-shiny
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r-shinyjqui))
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(native-inputs
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`(("esbuild" ,esbuild)
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("d3.v4.js"
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,(origin
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(method url-fetch)
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(uri "https://d3js.org/d3.v4.js")
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(sha256
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(base32
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"0y7byf6kcinfz9ac59jxc4v6kppdazmnyqfav0dm4h550fzfqqlg"))))))
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(home-page "https://github.com/ParkerICI/premessa")
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(synopsis "Pre-processing of flow and mass cytometry data")
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(description
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"This is an R package for pre-processing of flow and mass cytometry
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data. This package includes panel editing or renaming for FCS files,
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bead-based normalization and debarcoding.")
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(license license:gpl3))))
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(define-public r-presto
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(let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
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(revision "0"))
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