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gnu: Add r-annotationhubdata.

* gnu/packages/bioconductor.scm (r-annotationhubdata): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
master
Mădălin Ionel Patrașcu 2023-03-20 17:00:05 +01:00 committed by Ricardo Wurmus
parent 40b79eafee
commit 2336d5f57a
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@ -2707,6 +2707,57 @@ Powerful interactive and dynamic figures generated by animalcules enable users
to understand their data better and discover new insights.")
(license license:artistic2.0)))
(define-public r-annotationhubdata
(package
(name "r-annotationhubdata")
(version "1.28.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "AnnotationHubData" version))
(sha256
(base32 "0mcx09kcxccw2gkf4c3w7sxgb7v3gwbvahvx9wgq8f93q85yzg95"))))
(properties `((upstream-name . "AnnotationHubData")))
(build-system r-build-system)
(arguments
(list
#:phases
'(modify-phases %standard-phases
(add-before 'install 'set-home
(lambda _ (setenv "HOME" "/tmp"))))))
(propagated-inputs
(list r-annotationdbi
r-annotationforge
r-annotationhub
r-biobase
r-bioccheck
r-biocgenerics
r-biocmanager
r-biocviews
r-biostrings
r-dbi
r-futile-logger
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-graph
r-iranges
r-jsonlite
r-organismdbi
r-rcurl
r-rsamtools
r-rsqlite
r-rtracklayer
r-s4vectors
r-xml))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/AnnotationHubData")
(synopsis "Transform public data resources into Bioconductor data structures")
(description
"This package provides tools to acquire, annotate, convert and store data
for use in Bioconductors AnnotationHub.")
(license license:artistic2.0)))
(define-public r-anvil
(package
(name "r-anvil")