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gnu: Add r-adam.

* gnu/packages/bioconductor.scm (r-adam): New variable.
master
Mădălin Ionel Patrașcu 2022-04-17 10:13:43 +02:00 committed by Ricardo Wurmus
parent 6309131949
commit 2902adfc7e
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@ -1581,6 +1581,41 @@ expression level and gene-specific dispersion, that might facilitate the gene
ranking by fold-change and visualization.")
(license license:gpl3+)))
(define-public r-adam
(package
(name "r-adam")
(version "1.10.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "ADAM" version))
(sha256
(base32
"18zwci0ab54q7rdwj0n63w0i14lfrb4cccp09bcrq10gl1ki07f5"))))
(properties `((upstream-name . "ADAM")))
(build-system r-build-system)
(propagated-inputs (list r-dplyr
r-dt
r-go-db
r-keggrest
r-knitr
r-pbapply
r-rcpp
r-stringr
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/ADAM")
(synopsis "Gene activity and diversity analysis module")
(description
"This software @code{ADAM} is a @dfn{Gene set enrichment analysis} (GSEA)
package created to group a set of genes from comparative samples (control
versus experiment) belonging to different species according to their respective
functions. The corresponding roles are extracted from the default collections
like Gene ontology and @dfn{Kyoto encyclopedia of genes and genomes} (KEGG).
@code{ADAM} show their significance by calculating the p-values referring to
gene diversity and activity. Each group of genes is called @dfn{Group of
functionally associated genes} (GFAG).")
(license license:gpl2+)))
(define-public r-aneufinder
(package
(name "r-aneufinder")