gnu: Add r-circrnaprofiler.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): New variable.
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@ -6810,6 +6810,59 @@ accessibility data.")
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,@(alist-delete "r-monocle"
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,@(alist-delete "r-monocle"
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(package-propagated-inputs r-cicero)))))))
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(package-propagated-inputs r-cicero)))))))
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(define-public r-circrnaprofiler
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(package
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(name "r-circrnaprofiler")
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(version "1.4.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "circRNAprofiler" version))
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(sha256
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(base32
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"1rwpl9a5p5242aiapik0vf4ywqh7m6phzl8z8qmzcy0imbx7mpbn"))))
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(properties
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`((upstream-name . "circRNAprofiler")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationhub" ,r-annotationhub)
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("r-biostrings" ,r-biostrings)
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("r-bsgenome" ,r-bsgenome)
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("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
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("r-deseq2" ,r-deseq2)
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("r-dplyr" ,r-dplyr)
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("r-edger" ,r-edger)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-ggplot2" ,r-ggplot2)
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("r-gwascat" ,r-gwascat)
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("r-iranges" ,r-iranges)
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("r-magrittr" ,r-magrittr)
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("r-r-utils" ,r-r-utils)
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("r-readr" ,r-readr)
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("r-reshape2" ,r-reshape2)
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("r-rlang" ,r-rlang)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-seqinr" ,r-seqinr)
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("r-stringi" ,r-stringi)
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("r-stringr" ,r-stringr)
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("r-universalmotif" ,r-universalmotif)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page
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"https://github.com/Aufiero/circRNAprofiler")
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(synopsis
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"Computational framework for the downstream analysis of circular RNA's")
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(description
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"@code{r-circrnaprofiler} is a computational framework for a comprehensive
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in silico analysis of @dfn{circular RNA} (circRNAs). This computational
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framework allows to combine and analyze circRNAs previously detected by
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multiple publicly available annotation-based circRNA detection tools. It
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covers different aspects of circRNAs analysis from differential expression
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analysis, evolutionary conservation, biogenesis to functional analysis.")
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(license license:gpl3)))
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(define-public r-cistopic
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(define-public r-cistopic
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(let ((commit "29abd8df9afb60ff27ac3f0a590930debe926950")
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(let ((commit "29abd8df9afb60ff27ac3f0a590930debe926950")
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(revision "0"))
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(revision "0"))
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