From 2a40cd710604403ab500c053b55a6619f945ed16 Mon Sep 17 00:00:00 2001
From: Navid Afkhami <navid.afkhami@mdc-berlin.de>
Date: Sat, 2 Sep 2023 11:00:04 +0200
Subject: [PATCH] gnu: r-chromunity: Update to 0.0.2-1.712e56c.
* gnu/packages/bioinformatics.scm (r-chromunity): Update to 0.0.2-1.712e56c.
[propagated-inputs]: Add r-bsgenome-hsapiens-ucsc-hg38; remove r-skitools.
---
gnu/packages/bioinformatics.scm | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2669942438..8968325e83 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9791,11 +9791,11 @@ tasks.")
(license license:expat))))
(define-public r-chromunity
- (let ((commit "09fce8bc12cb84b45a6ea25bf8db6e5b75113d4f")
+ (let ((commit "712e56ccba64e8881dbb203546379a5c3c639bb2")
(revision "1"))
(package
(name "r-chromunity")
- (version (git-version "0.0.1" revision commit))
+ (version (git-version "0.0.2" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
@@ -9804,12 +9804,13 @@ tasks.")
(file-name (git-file-name name version))
(sha256
(base32
- "0lp0h614k8fq6h9gpbylk4chh7q6w4qda8lx03ajrpppxmg7al2d"))))
+ "0sdja11l7bg5rmcbp2cl226cq9qrj3r8kq5lg49zbin83hya27vh"))))
(properties `((upstream-name . "chromunity")))
(build-system r-build-system)
(propagated-inputs
(list r-arrow
r-biocgenerics
+ r-bsgenome-hsapiens-ucsc-hg38
r-data-table
r-gchain
r-genomicranges
@@ -9821,7 +9822,6 @@ tasks.")
r-pbmcapply
r-plyr
r-r6
- r-skitools
r-zoo))
(home-page "https://github.com/mskilab/chromunity")
(synopsis "Discovery of communities in Pore-C concatemers")