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gnu: Add wiggletools.

* gnu/packages/bioinformatics.scm (wiggletools): New variable.
Ricardo Wurmus 2022-12-22 10:25:09 +01:00
parent 7c2dab7dd4
commit 2a4930a1e6
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1 changed files with 41 additions and 0 deletions

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@ -17637,6 +17637,47 @@ module capable of computing base-level alignments for very large sequences.")
(home-page "https://github.com/ekg/wfmash")
(license license:expat)))
(define-public wiggletools
(package
(name "wiggletools")
(version "1.2.11")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/Ensembl/WiggleTools/")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"1g3qla4l1g583nzlgyww5jqxpq87ndpn9cmjls098bgqjyn5292q"))))
(build-system gnu-build-system)
(arguments
(list
;; Tests require internet access
#:tests? #false
#:make-flags
#~(list "Wiggletools"
(string-append "CC=" #$(cc-for-target)))
#:phases
#~(modify-phases %standard-phases
(delete 'configure)
(replace 'install
(lambda _
(install-file "bin/wiggletools"
(string-append #$output "/bin")))))))
(inputs
(list curl ; XXX: needed by libbigwig
htslib libbigwig gsl xz zlib))
(home-page "https://github.com/Ensembl/WiggleTools/")
(synopsis "Operations on the space of numerical functions defined on the genome")
(description "The WiggleTools package allows genomewide data files to be
manipulated as numerical functions, equipped with all the standard functional
analysis operators (sum, product, product by a scalar, comparators), and
derived statistics (mean, median, variance, stddev, t-test, Wilcoxon's rank
sum test, etc).")
(license license:asl2.0)))
(define-public flair
(package
(name "flair")