gnu: Add wiggletools.
* gnu/packages/bioinformatics.scm (wiggletools): New variable.
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@ -17637,6 +17637,47 @@ module capable of computing base-level alignments for very large sequences.")
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(home-page "https://github.com/ekg/wfmash")
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(home-page "https://github.com/ekg/wfmash")
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(license license:expat)))
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(license license:expat)))
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(define-public wiggletools
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(package
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(name "wiggletools")
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(version "1.2.11")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/Ensembl/WiggleTools/")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1g3qla4l1g583nzlgyww5jqxpq87ndpn9cmjls098bgqjyn5292q"))))
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(build-system gnu-build-system)
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(arguments
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(list
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;; Tests require internet access
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#:tests? #false
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#:make-flags
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#~(list "Wiggletools"
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(string-append "CC=" #$(cc-for-target)))
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#:phases
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#~(modify-phases %standard-phases
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(delete 'configure)
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(replace 'install
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(lambda _
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(install-file "bin/wiggletools"
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(string-append #$output "/bin")))))))
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(inputs
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(list curl ; XXX: needed by libbigwig
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htslib libbigwig gsl xz zlib))
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(home-page "https://github.com/Ensembl/WiggleTools/")
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(synopsis "Operations on the space of numerical functions defined on the genome")
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(description "The WiggleTools package allows genomewide data files to be
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manipulated as numerical functions, equipped with all the standard functional
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analysis operators (sum, product, product by a scalar, comparators), and
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derived statistics (mean, median, variance, stddev, t-test, Wilcoxon's rank
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sum test, etc).")
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(license license:asl2.0)))
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(define-public flair
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(define-public flair
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(package
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(package
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(name "flair")
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(name "flair")
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