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gnu: Add r-spectre. 

* gnu/packages/bioinformatics.scm (r-spectre): New variable.
Ricardo Wurmus 2021-08-03 10:40:47 +02:00
parent 138a0f8ed6
commit 2ab5d08fbe
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@ -14806,3 +14806,75 @@ ploidy and allele-specific copy number profiles.")
copy number estimation, as described by
@url{doi:10.1016/j.cell.2012.04.023,Nik-Zainal et al.}")
(license license:gpl3)))
(define-public r-spectre
(let ((commit "f6648ab3eb9499300d86502b5d60ec370ae9b61a")
(revision "1"))
(package
(name "r-spectre")
(version (git-version "0.5.5" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/ImmuneDynamics/Spectre")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"0g38grrhbqqa4bmcilvdyawbkcnax6k4vffx2giywp18mbirmj0x"))))
(properties `((upstream-name . "Spectre")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocmanager" ,r-biocmanager)
("r-caret" ,r-caret)
("r-class" ,r-class)
("r-colorramps" ,r-colorramps)
("r-data-table" ,r-data-table)
("r-devtools" ,r-devtools)
("r-dplyr" ,r-dplyr)
("r-exactextractr" ,r-exactextractr)
("r-factoextra" ,r-factoextra)
("r-flowcore" ,r-flowcore)
("r-flowsom" ,r-flowsom)
("r-flowviz" ,r-flowviz)
("r-fnn" ,r-fnn)
("r-ggplot2" ,r-ggplot2)
("r-ggpointdensity" ,r-ggpointdensity)
("r-ggpubr" ,r-ggpubr)
("r-ggraph" ,r-ggraph)
("r-ggthemes" ,r-ggthemes)
("r-gridextra" ,r-gridextra)
("r-gridextra" ,r-gridextra)
("r-gtools" ,r-gtools)
("r-hdf5array" ,r-hdf5array)
("r-irlba" ,r-irlba)
("r-pheatmap" ,r-pheatmap)
("r-plyr" ,r-plyr)
("r-qs" ,r-qs)
("r-raster" ,r-raster)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rgeos" ,r-rgeos)
("r-rhdf5" ,r-rhdf5)
("r-rstudioapi" ,r-rstudioapi)
("r-rsvd" ,r-rsvd)
("r-rtsne" ,r-rtsne)
("r-s2" ,r-s2)
("r-scales" ,r-scales)
("r-sf" ,r-sf)
("r-sp" ,r-sp)
("r-stars" ,r-stars)
("r-stringr" ,r-stringr)
("r-tidygraph" ,r-tidygraph)
("r-tidyr" ,r-tidyr)
("r-tidyr" ,r-tidyr)
("r-tiff" ,r-tiff)
("r-umap" ,r-umap)))
(home-page "https://github.com/ImmuneDynamics/Spectre")
(synopsis "High-dimensional cytometry and imaging analysis")
(description
"This package provides a computational toolkit in R for the
integration, exploration, and analysis of high-dimensional single-cell
cytometry and imaging data.")
(license license:expat))))