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gnu: Add r-tfbstools.

* gnu/packages/bioconductor.scm (r-tfbstools): New variable.
master
Ricardo Wurmus 2021-02-18 15:35:38 +01:00
parent e6bc150b0c
commit 2def2e203f
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@ -8926,6 +8926,52 @@ advanced visualization of sets of conserved noncoding elements.")
(license:non-copyleft
"https://raw.githubusercontent.com/ucscGenomeBrowser/kent/v410_base/src/lib/LICENSE")))))
(define-public r-tfbstools
(package
(name "r-tfbstools")
(version "1.28.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "TFBSTools" version))
(sha256
(base32
"0p42hnwhipmcvrsqk3s8qfiian1fvh6izfd9m961bsx99r2clnha"))))
(properties `((upstream-name . "TFBSTools")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
("r-catools" ,r-catools)
("r-cner" ,r-cner)
("r-dbi" ,r-dbi)
("r-dirichletmultinomial" ,r-dirichletmultinomial)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-gtools" ,r-gtools)
("r-iranges" ,r-iranges)
("r-rsqlite" ,r-rsqlite)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-seqlogo" ,r-seqlogo)
("r-tfmpvalue" ,r-tfmpvalue)
("r-xml" ,r-xml)
("r-xvector" ,r-xvector)))
(native-inputs `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/ge11232002/TFBSTools")
(synopsis "Transcription factor binding site (TFBS) analysis")
(description
"TFBSTools is a package for the analysis and manipulation of
transcription factor binding sites. It includes matrices conversion
between @dfn{Position Frequency Matrix} (PFM), @dfn{Position Weight
Matrix} (PWM) and @dfn{Information Content Matrix} (ICM). It can also
scan putative TFBS from sequence/alignment, query JASPAR database and
provides a wrapper of de novo motif discovery software.")
(license license:gpl2)))
(define-public r-singlecellexperiment
(package
(name "r-singlecellexperiment")