gnu: Add r-tfbstools.
* gnu/packages/bioconductor.scm (r-tfbstools): New variable.master
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@ -8926,6 +8926,52 @@ advanced visualization of sets of conserved noncoding elements.")
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(license:non-copyleft
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"https://raw.githubusercontent.com/ucscGenomeBrowser/kent/v410_base/src/lib/LICENSE")))))
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(define-public r-tfbstools
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(package
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(name "r-tfbstools")
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(version "1.28.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "TFBSTools" version))
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(sha256
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(base32
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"0p42hnwhipmcvrsqk3s8qfiian1fvh6izfd9m961bsx99r2clnha"))))
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(properties `((upstream-name . "TFBSTools")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocparallel" ,r-biocparallel)
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("r-biostrings" ,r-biostrings)
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("r-bsgenome" ,r-bsgenome)
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("r-catools" ,r-catools)
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("r-cner" ,r-cner)
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("r-dbi" ,r-dbi)
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("r-dirichletmultinomial" ,r-dirichletmultinomial)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-gtools" ,r-gtools)
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("r-iranges" ,r-iranges)
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("r-rsqlite" ,r-rsqlite)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-seqlogo" ,r-seqlogo)
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("r-tfmpvalue" ,r-tfmpvalue)
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("r-xml" ,r-xml)
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("r-xvector" ,r-xvector)))
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(native-inputs `(("r-knitr" ,r-knitr)))
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(home-page "https://github.com/ge11232002/TFBSTools")
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(synopsis "Transcription factor binding site (TFBS) analysis")
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(description
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"TFBSTools is a package for the analysis and manipulation of
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transcription factor binding sites. It includes matrices conversion
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between @dfn{Position Frequency Matrix} (PFM), @dfn{Position Weight
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Matrix} (PWM) and @dfn{Information Content Matrix} (ICM). It can also
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scan putative TFBS from sequence/alignment, query JASPAR database and
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provides a wrapper of de novo motif discovery software.")
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(license license:gpl2)))
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(define-public r-singlecellexperiment
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(package
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(name "r-singlecellexperiment")
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