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gnu: python-pyega3: Define as deprecated alias for python-ega-download-client. 

* gnu/packages/bioinformatics.scm (python-pyega3): Define as deprecated alias
for python-ega-download-client.
(python-ega-download-client)[description]: Merge with contents from
python-pyega3.

Change-Id: Ic7f4d0cf49cedaca78035dca95b48d317307084d
master
Ricardo Wurmus 2024-02-20 09:41:01 +01:00
parent 312a479f8f
commit 2e656d674c
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GPG Key ID: 197A5888235FACAC
1 changed files with 16 additions and 36 deletions
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@ -2572,9 +2572,21 @@ Python.")
python-responses python-mock))
(home-page "https://github.com/EGA-archive/ega-download-client")
(synopsis "EGA download client")
(description
"PyEGA3 is a tool for viewing and downloading files from authorized EGA
datasets.")
(description "PyEGA3 is a tool for viewing and downloading files from
authorized EGA datasets. It uses the EGA data API and has several key
features:
@itemize
@item Files are transferred over secure https connections and received
unencrypted, so no need for decryption after download.
@item Downloads resume from where they left off in the event that the
connection is interrupted.
@item Supports file segmenting and parallelized download of segments,
improving overall performance.
@item After download completes, file integrity is verified using checksums.
@item Implements the GA4GH-compliant htsget protocol for download of genomic
ranges for data files with accompanying index files.
@end itemize\n")
(license license:asl2.0)))
(define-public python-scdamandtools
@ -4093,39 +4105,7 @@ omics data.")
(license license:bsd-3)))
(define-public python-pyega3
(package
(name "python-pyega3")
(version "3.4.1")
(source (origin
(method url-fetch)
(uri (pypi-uri "pyega3" version))
(sha256
(base32
"1k736in8g27rarx65ym9xk50x53zjg75h37bb8ljynxv04rypx2q"))))
(build-system python-build-system)
(arguments
`(#:tests? #f)) ; The tests require network access.
(native-inputs
(list python-psutil python-htsget))
(propagated-inputs
(list python-requests python-tqdm python-urllib3 python-responses))
(home-page "https://github.com/EGA-archive/ega-download-client")
(synopsis "Python client for EGA")
(description "This package is a python-based tool for viewing and
downloading files from authorized EGA datasets. It uses the EGA data API and
has several key features:
@itemize
@item Files are transferred over secure https connections and received
unencrypted, so no need for decryption after download.
@item Downloads resume from where they left off in the event that the
connection is interrupted.
@item Supports file segmenting and parallelized download of segments,
improving overall performance.
@item After download completes, file integrity is verified using checksums.
@item Implements the GA4GH-compliant htsget protocol for download of genomic
ranges for data files with accompanying index files.
@end itemize\n")
(license license:asl2.0)))
(deprecated-package "python-pyega3" python-ega-download-client))
(define-public python-pysam
(package