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gnu: r-missmethyl: Move out of experiments section.

* gnu/packages/bioconductor.scm (r-missmethyl): Move from experiments section
to packages section.
Ricardo Wurmus 2023-07-19 15:06:03 +02:00
parent e74e9f6240
commit 2edbfd43aa
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1 changed files with 50 additions and 50 deletions

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@ -1731,56 +1731,6 @@ in Nature Genetics, January 2018.")
methylation arrays.")
(license license:artistic2.0)))
(define-public r-missmethyl
(package
(name "r-missmethyl")
(version "1.34.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "missMethyl" version))
(sha256
(base32
"1jvrdr57mv93pcbyazcg1bcx1zd0kp72hi1if839gw54hk3igs3h"))))
(properties `((upstream-name . "missMethyl")))
(build-system r-build-system)
(propagated-inputs
(list r-annotationdbi
r-biasedurn
r-biobase
r-biocgenerics
r-genomicranges
r-go-db
r-illuminahumanmethylation450kanno-ilmn12-hg19
r-illuminahumanmethylation450kmanifest
r-illuminahumanmethylationepicanno-ilm10b4-hg19
r-illuminahumanmethylationepicmanifest
r-iranges
r-limma
r-methylumi
r-minfi
r-org-hs-eg-db
r-ruv
r-s4vectors
r-statmod
r-stringr
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/missMethyl")
(synopsis "Analyzing Illumina HumanMethylation BeadChip data")
(description
"This is a package for normalization, testing for differential
variability and differential methylation and gene set testing for data from
Illumina's Infinium HumanMethylation arrays. The normalization procedure is
subset-quantile within-array normalization (SWAN), which allows Infinium I and
II type probes on a single array to be normalized together. The test for
differential variability is based on an empirical Bayes version of Levene's
test. Differential methylation testing is performed using RUV, which can
adjust for systematic errors of unknown origin in high-dimensional data by
using negative control probes. Gene ontology analysis is performed by taking
into account the number of probes per gene on the array, as well as taking
into account multi-gene associated probes.")
(license license:gpl2)))
(define-public r-msdata
(package
(name "r-msdata")
@ -12850,6 +12800,56 @@ model.")
methylation arrays.")
(license license:artistic2.0)))
(define-public r-missmethyl
(package
(name "r-missmethyl")
(version "1.34.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "missMethyl" version))
(sha256
(base32
"1jvrdr57mv93pcbyazcg1bcx1zd0kp72hi1if839gw54hk3igs3h"))))
(properties `((upstream-name . "missMethyl")))
(build-system r-build-system)
(propagated-inputs
(list r-annotationdbi
r-biasedurn
r-biobase
r-biocgenerics
r-genomicranges
r-go-db
r-illuminahumanmethylation450kanno-ilmn12-hg19
r-illuminahumanmethylation450kmanifest
r-illuminahumanmethylationepicanno-ilm10b4-hg19
r-illuminahumanmethylationepicmanifest
r-iranges
r-limma
r-methylumi
r-minfi
r-org-hs-eg-db
r-ruv
r-s4vectors
r-statmod
r-stringr
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/missMethyl")
(synopsis "Analyzing Illumina HumanMethylation BeadChip data")
(description
"This is a package for normalization, testing for differential
variability and differential methylation and gene set testing for data from
Illumina's Infinium HumanMethylation arrays. The normalization procedure is
subset-quantile within-array normalization (SWAN), which allows Infinium I and
II type probes on a single array to be normalized together. The test for
differential variability is based on an empirical Bayes version of Levene's
test. Differential methylation testing is performed using RUV, which can
adjust for systematic errors of unknown origin in high-dimensional data by
using negative control probes. Gene ontology analysis is performed by taking
into account the number of probes per gene on the array, as well as taking
into account multi-gene associated probes.")
(license license:gpl2)))
(define-public r-methylumi
(package
(name "r-methylumi")