gnu: Add r-clusterexperiment.
* gnu/packages/bioconductor.scm (r-clusterexperiment): New variable.master
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@ -5293,6 +5293,52 @@ All the visualization methods are developed based on ggplot2 graphics.")
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profiles (GO and KEGG) of gene and gene clusters.")
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(license license:artistic2.0)))
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(define-public r-clusterexperiment
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(package
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(name "r-clusterexperiment")
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(version "2.10.1")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "clusterExperiment" version))
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(sha256
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(base32
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"04n3lcm7dh07sjkzyv83m55mx3lz0lkcy8yq9hi0zywqyrhyzz7z"))))
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(build-system r-build-system)
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(propagated-inputs
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`(("r-ape" ,r-ape)
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("r-biocgenerics" ,r-biocgenerics)
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("r-cluster" ,r-cluster)
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("r-delayedarray" ,r-delayedarray)
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("r-edger" ,r-edger)
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("r-hdf5array" ,r-hdf5array)
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("r-howmany" ,r-howmany)
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("r-kernlab" ,r-kernlab)
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("r-limma" ,r-limma)
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("r-locfdr" ,r-locfdr)
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("r-matrix" ,r-matrix)
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("r-matrixstats" ,r-matrixstats)
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("r-mbkmeans" ,r-mbkmeans)
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("r-nmf" ,r-nmf)
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("r-phylobase" ,r-phylobase)
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("r-pracma" ,r-pracma)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-rcpp" ,r-rcpp)
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("r-rspectra" ,r-rspectra)
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("r-s4vectors" ,r-s4vectors)
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("r-scales" ,r-scales)
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("r-singlecellexperiment" ,r-singlecellexperiment)
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("r-stringr" ,r-stringr)
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("r-summarizedexperiment" ,r-summarizedexperiment)
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("r-zinbwave" ,r-zinbwave)))
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(home-page "https://bioconductor.org/packages/clusterExperiment/")
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(synopsis "Compare clusterings for single-cell sequencing")
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(description "This package provides functionality for running and comparing
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many different clusterings of single-cell sequencing data or other large mRNA
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expression data sets.")
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(license license:artistic2.0)))
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(define-public r-mlinterfaces
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(package
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(name "r-mlinterfaces")
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