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gnu: Add r-clusterexperiment.

* gnu/packages/bioconductor.scm (r-clusterexperiment): New variable.
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Roel Janssen 2021-05-26 23:54:14 +02:00
parent 700b10f181
commit 2fc74f3176
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@ -5293,6 +5293,52 @@ All the visualization methods are developed based on ggplot2 graphics.")
profiles (GO and KEGG) of gene and gene clusters.")
(license license:artistic2.0)))
(define-public r-clusterexperiment
(package
(name "r-clusterexperiment")
(version "2.10.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "clusterExperiment" version))
(sha256
(base32
"04n3lcm7dh07sjkzyv83m55mx3lz0lkcy8yq9hi0zywqyrhyzz7z"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
(propagated-inputs
`(("r-ape" ,r-ape)
("r-biocgenerics" ,r-biocgenerics)
("r-cluster" ,r-cluster)
("r-delayedarray" ,r-delayedarray)
("r-edger" ,r-edger)
("r-hdf5array" ,r-hdf5array)
("r-howmany" ,r-howmany)
("r-kernlab" ,r-kernlab)
("r-limma" ,r-limma)
("r-locfdr" ,r-locfdr)
("r-matrix" ,r-matrix)
("r-matrixstats" ,r-matrixstats)
("r-mbkmeans" ,r-mbkmeans)
("r-nmf" ,r-nmf)
("r-phylobase" ,r-phylobase)
("r-pracma" ,r-pracma)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rcpp" ,r-rcpp)
("r-rspectra" ,r-rspectra)
("r-s4vectors" ,r-s4vectors)
("r-scales" ,r-scales)
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-stringr" ,r-stringr)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-zinbwave" ,r-zinbwave)))
(home-page "https://bioconductor.org/packages/clusterExperiment/")
(synopsis "Compare clusterings for single-cell sequencing")
(description "This package provides functionality for running and comparing
many different clusterings of single-cell sequencing data or other large mRNA
expression data sets.")
(license license:artistic2.0)))
(define-public r-mlinterfaces
(package
(name "r-mlinterfaces")