gnu: Add GenomicFeatures.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): New variable.master
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@ -3746,6 +3746,47 @@ built-in). The user may export/import tracks to/from the supported browsers,
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as well as query and modify the browser state, such as the current viewport.")
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(license license:artistic2.0)))
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(define-public r-genomicfeatures
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(package
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(name "r-genomicfeatures")
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(version "1.22.7")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "GenomicFeatures" version))
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(sha256
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(base32
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"1jb4s49ar5j9qslpd3kfdg2wrl4q7ciysd55h9a7zvspymxcngq8"))))
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(properties
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`((upstream-name . "GenomicFeatures")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biomart" ,r-biomart)
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("r-biostrings" ,r-biostrings)
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("r-dbi" ,r-dbi)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-rcurl" ,r-rcurl)
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("r-rsqlite" ,r-rsqlite)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-xvector" ,r-xvector)))
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(home-page "http://bioconductor.org/packages/GenomicFeatures")
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(synopsis "Tools for working with transcript centric annotations")
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(description
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"This package provides a set of tools and methods for making and
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manipulating transcript centric annotations. With these tools the user can
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easily download the genomic locations of the transcripts, exons and cds of a
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given organism, from either the UCSC Genome Browser or a BioMart
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database (more sources will be supported in the future). This information is
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then stored in a local database that keeps track of the relationship between
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transcripts, exons, cds and genes. Flexible methods are provided for
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extracting the desired features in a convenient format.")
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(license license:artistic2.0)))
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(define-public r-qtl
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(package
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(name "r-qtl")
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