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gnu: python-pybigwig: Update to 0.3.22. 

* gnu/packages/bioinformatics.scm (python-pybigwig): Update to 0.3.22.
[source]: Simplify snippet.
[arguments]: Explicitly disable tests; simplify 'link-with-libBigWig phase.
[build-system]: Use pyproject-build-system.
master
Ricardo Wurmus 2023-05-14 13:26:21 +02:00
parent 7e303658d7
commit 302e7b7820
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GPG Key ID: 197A5888235FACAC
1 changed files with 9 additions and 11 deletions
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@ -3679,28 +3679,26 @@ files.")
(define-public python-pybigwig (define-public python-pybigwig
(package (package
(name "python-pybigwig") (name "python-pybigwig")
(version "0.3.17") (version "0.3.22")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (pypi-uri "pyBigWig" version)) (uri (pypi-uri "pyBigWig" version))
(sha256 (sha256
(base32 (base32
"157x6v48y299zm382krf1dw08fdxg95im8lnabhp5vc94s04zxj1")) "0hr25lkp26mk0fp7irdjdrdsd5lann9kyv0xq9npyyxxakvjci2x"))
(modules '((guix build utils))) (modules '((guix build utils)))
(snippet (snippet
'(begin
;; Delete bundled libBigWig sources ;; Delete bundled libBigWig sources
(delete-file-recursively "libBigWig") '(delete-file-recursively "libBigWig"))))
#t)))) (build-system pyproject-build-system)
(build-system python-build-system)
(arguments (arguments
`(#:phases '(#:tests? #false ;only one test exists and it needs internet access
#:phases
(modify-phases %standard-phases (modify-phases %standard-phases
(add-after 'unpack 'link-with-libBigWig (add-after 'unpack 'link-with-libBigWig
(lambda* (#:key inputs #:allow-other-keys) (lambda _
(substitute* "setup.py" (substitute* "setup.py"
(("libs=\\[") "libs=[\"BigWig\", ")) (("libs=\\[") "libs=[\"BigWig\", ")))))))
#t)))))
(propagated-inputs (propagated-inputs
(list python-numpy)) (list python-numpy))
(inputs (inputs