gnu: r-fithic: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-fithic): Move from here... * gnu/packages/bioconductor.scm (r-fithic): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>master
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@ -8348,6 +8348,32 @@ routines.")
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objects from the @code{graph} package.")
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(license license:epl1.0)))
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(define-public r-fithic
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(package
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(name "r-fithic")
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(version "1.14.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "FitHiC" version))
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(sha256
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(base32
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"1dffkdxm08wq4kjd9j2v2625x3p6vbrk33a2zx94pwpgkghr72yp"))))
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(properties `((upstream-name . "FitHiC")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-data-table" ,r-data-table)
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("r-fdrtool" ,r-fdrtool)
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("r-rcpp" ,r-rcpp)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/FitHiC")
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(synopsis "Confidence estimation for intra-chromosomal contact maps")
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(description
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"Fit-Hi-C is a tool for assigning statistical confidence estimates to
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intra-chromosomal contact maps produced by genome-wide genome architecture
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assays such as Hi-C.")
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(license license:gpl2+)))
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(define-public r-hitc
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(package
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(name "r-hitc")
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@ -10599,32 +10599,6 @@ EMBL-EBI GWAS catalog.")
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visualizations for publication-quality multi-panel figures.")
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(license license:gpl2+)))
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(define-public r-fithic
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(package
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(name "r-fithic")
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(version "1.14.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "FitHiC" version))
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(sha256
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(base32
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"1dffkdxm08wq4kjd9j2v2625x3p6vbrk33a2zx94pwpgkghr72yp"))))
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(properties `((upstream-name . "FitHiC")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-data-table" ,r-data-table)
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("r-fdrtool" ,r-fdrtool)
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("r-rcpp" ,r-rcpp)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/FitHiC")
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(synopsis "Confidence estimation for intra-chromosomal contact maps")
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(description
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"Fit-Hi-C is a tool for assigning statistical confidence estimates to
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intra-chromosomal contact maps produced by genome-wide genome architecture
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assays such as Hi-C.")
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(license license:gpl2+)))
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(define-public r-dropbead
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(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
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(revision "2"))
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