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gnu: r-fastseg: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-fastseg): Move from here...
* gnu/packages/bioconductor.scm (r-fastseg): ...to here.
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zimoun 2021-05-21 22:25:53 +02:00 • committed by Ricardo Wurmus
parent 9644745692
commit 32ae36e96f
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2 changed files with 30 additions and 30 deletions
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30
gnu/packages/bioconductor.scm
View file

@ -2441,6 +2441,36 @@ other types of genomic data that produce counts, including ChIP-seq, SAGE and
CAGE.") CAGE.")
(license license:gpl2+))) (license license:gpl2+)))
(define-public r-fastseg
(package
(name "r-fastseg")
(version "1.36.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "fastseg" version))
(sha256
(base32
"1ln6w93ag4wanp0nrm0pqngbfc88w95zq2kcj583hbxy885dkg4f"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-s4vectors" ,r-s4vectors)))
(home-page "https://www.bioinf.jku.at/software/fastseg/index.html")
(synopsis "Fast segmentation algorithm for genetic sequencing data")
(description
"Fastseg implements a very fast and efficient segmentation algorithm.
It can segment data from DNA microarrays and data from next generation
sequencing for example to detect copy number segments. Further it can segment
data from RNA microarrays like tiling arrays to identify transcripts. Most
generally, it can segment data given as a matrix or as a vector. Various data
formats can be used as input to fastseg like expression set objects for
microarrays or GRanges for sequencing data.")
(license license:lgpl2.0+)))
(define-public r-genefilter (define-public r-genefilter
(package (package
(name "r-genefilter") (name "r-genefilter")

30
gnu/packages/bioinformatics.scm
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@ -9196,36 +9196,6 @@ their variance is independent of the mean, and they are usually more sensitive
and specific in detecting differential transcription.") and specific in detecting differential transcription.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-fastseg
(package
(name "r-fastseg")
(version "1.36.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "fastseg" version))
(sha256
(base32
"1ln6w93ag4wanp0nrm0pqngbfc88w95zq2kcj583hbxy885dkg4f"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-s4vectors" ,r-s4vectors)))
(home-page "https://www.bioinf.jku.at/software/fastseg/index.html")
(synopsis "Fast segmentation algorithm for genetic sequencing data")
(description
"Fastseg implements a very fast and efficient segmentation algorithm.
It can segment data from DNA microarrays and data from next generation
sequencing for example to detect copy number segments. Further it can segment
data from RNA microarrays like tiling arrays to identify transcripts. Most
generally, it can segment data given as a matrix or as a vector. Various data
formats can be used as input to fastseg like expression set objects for
microarrays or GRanges for sequencing data.")
(license license:lgpl2.0+)))
(define-public r-keggrest (define-public r-keggrest
(package (package
(name "r-keggrest") (name "r-keggrest")