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@ -28581,6 +28581,49 @@ algorithms; density clustering, hierarchical clustering, k-means, and the
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discovery of differentially expressed genes and markers.")
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(license license:gpl3)))
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(define-public r-seuratdisk
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(let ((commit "163f1aade5bac38ed1e9e9c912283a7e74781610")
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(revision "1"))
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(package
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(name "r-seuratdisk")
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(version (git-version "0.0.0.9019" revision commit))
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/mojaveazure/seurat-disk")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32 "1d1v8qi6kknzy5fj6bl8akwy74h5h143i00lyidsnqjbwp9n4qnw"))))
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(properties `((upstream-name . "SeuratDisk")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-cli" ,r-cli)
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("r-crayon" ,r-crayon)
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("r-hdf5r" ,r-hdf5r)
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("r-matrix" ,r-matrix)
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("r-r6" ,r-r6)
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("r-rlang" ,r-rlang)
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("r-seurat" ,r-seurat)
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("r-seuratobject" ,r-seuratobject)
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("r-stringi" ,r-stringi)
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("r-withr" ,r-withr)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://github.com/mojaveazure/seurat-disk")
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(synopsis "Interfaces for HDF5-based single cell file formats")
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(description
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"The h5Seurat file format is specifically designed for the storage and
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analysis of multi-modal single-cell and spatially-resolved expression
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experiments, for example, from CITE-seq or 10X Visium technologies. It holds
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all molecular information and associated metadata, including (for example)
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nearest-neighbor graphs, dimensional reduction information, spatial
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coordinates and image data, and cluster labels. This package also supports
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rapid and on-disk conversion between h5Seurat and AnnData objects, with the
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goal of enhancing interoperability between Seurat and Scanpy.")
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(license license:gpl3))))
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(define-public r-phangorn
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(package
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(name "r-phangorn")
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